A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.8
nTPM
Monaco:
12.2
nTPM
Schmiedel:
14.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.8
HPA sample
nTPM
Classical monocyte nTPM: 9.8
Samples: 6
Max nTPM: 17.2
Min nTPM: 3.7
P10809_1003
3.7
P10809_1020
5.2
P10809_1039
5.0
P10809_1058
15.9
P10809_1080
17.2
P10809_1107
11.7
Intermediate monocyte nTPM: 3.3
Samples: 6
Max nTPM: 6.6
Min nTPM: 1.2
P10809_1004
1.2
P10809_1023
1.3
P10809_1042
2.1
P10809_1061
6.5
P10809_1081
6.6
P10809_1108
2.2
Non-classical monocyte nTPM: 1.1
Samples: 5
Max nTPM: 2.5
Min nTPM: 0.0
P10809_1005
1.1
P10809_1053
0.8
P10809_1072
0.0
P10809_1082
2.5
P10809_1109
0.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.2
Monaco sample
nTPM
Classical monocyte nTPM: 12.2
Samples: 4
Max nTPM: 19.7
Min nTPM: 3.4
RHH5313_R3680
19.7
RHH5221_R3593
17.3
RHH5250_R3622
8.2
RHH5279_R3651
3.4
Intermediate monocyte nTPM: 5.5
Samples: 4
Max nTPM: 6.5
Min nTPM: 3.8
RHH5314_R3681
3.8
RHH5222_R3594
6.5
RHH5251_R3623
5.5
RHH5280_R3652
6.2
Non-classical monocyte nTPM: 7.8
Samples: 4
Max nTPM: 10.9
Min nTPM: 5.1
RHH5315_R3682
5.1
RHH5223_R3595
7.4
RHH5252_R3624
10.9
RHH5281_R3653
7.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.7
Schmiedel sample id
TPM
Classical monocyte TPM: 14.7
Samples: 91
Max TPM: 21.8
Min TPM: 8.9
MONOCYTES_1
21.8
MONOCYTES_2
21.6
MONOCYTES_3
20.6
MONOCYTES_4
20.6
MONOCYTES_5
20.2
MONOCYTES_6
19.4
MONOCYTES_7
19.2
MONOCYTES_8
18.9
MONOCYTES_9
18.9
MONOCYTES_10
18.5
MONOCYTES_11
18.1
MONOCYTES_12
17.6
MONOCYTES_13
17.6
MONOCYTES_14
17.6
MONOCYTES_15
17.5
MONOCYTES_16
17.3
MONOCYTES_17
17.2
MONOCYTES_18
17.1
MONOCYTES_19
17.0
MONOCYTES_20
17.0
MONOCYTES_21
16.8
MONOCYTES_22
16.7
MONOCYTES_23
16.6
MONOCYTES_24
16.3
MONOCYTES_25
16.3
MONOCYTES_26
16.0
MONOCYTES_27
15.8
MONOCYTES_28
15.7
MONOCYTES_29
15.6
MONOCYTES_30
15.6
MONOCYTES_31
15.5
MONOCYTES_32
15.4
MONOCYTES_33
15.4
MONOCYTES_34
15.3
MONOCYTES_35
15.3
MONOCYTES_36
15.3
MONOCYTES_37
15.1
MONOCYTES_38
15.1
MONOCYTES_39
15.0
MONOCYTES_40
14.8
MONOCYTES_41
14.7
MONOCYTES_42
14.7
MONOCYTES_43
14.7
MONOCYTES_44
14.7
MONOCYTES_45
14.6
MONOCYTES_46
14.5
MONOCYTES_47
14.4
MONOCYTES_48
14.4
MONOCYTES_49
14.4
MONOCYTES_50
14.4
MONOCYTES_51
14.2
MONOCYTES_52
14.2
MONOCYTES_53
14.2
MONOCYTES_54
14.2
MONOCYTES_55
14.0
MONOCYTES_56
14.0
MONOCYTES_57
13.9
MONOCYTES_58
13.5
MONOCYTES_59
13.4
MONOCYTES_60
13.4
MONOCYTES_61
13.4
MONOCYTES_62
13.3
MONOCYTES_63
13.3
MONOCYTES_64
12.9
MONOCYTES_65
12.7
MONOCYTES_66
12.6
MONOCYTES_67
12.6
MONOCYTES_68
12.5
MONOCYTES_69
12.5
MONOCYTES_70
12.4
MONOCYTES_71
12.3
MONOCYTES_72
12.3
MONOCYTES_73
12.1
MONOCYTES_74
12.1
MONOCYTES_75
12.0
MONOCYTES_76
11.8
MONOCYTES_77
11.8
MONOCYTES_78
11.8
MONOCYTES_79
11.7
MONOCYTES_80
11.5
MONOCYTES_81
11.3
MONOCYTES_82
11.3
MONOCYTES_83
11.2
MONOCYTES_84
11.2
MONOCYTES_85
11.1
MONOCYTES_86
10.7
MONOCYTES_87
10.6
MONOCYTES_88
10.5
MONOCYTES_89
10.3
MONOCYTES_90
9.7
MONOCYTES_91
8.9
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Non-classical monocyte TPM: 6.9
Samples: 90
Max TPM: 11.2
Min TPM: 3.3
M2_1
11.2
M2_2
10.6
M2_3
9.8
M2_4
9.7
M2_5
9.7
M2_6
9.7
M2_7
9.7
M2_8
9.6
M2_9
9.6
M2_10
9.1
M2_11
9.1
M2_12
8.8
M2_13
8.8
M2_14
8.7
M2_15
8.7
M2_16
8.7
M2_17
8.7
M2_18
8.6
M2_19
8.5
M2_20
8.4
M2_21
8.4
M2_22
8.0
M2_23
7.9
M2_24
7.8
M2_25
7.8
M2_26
7.7
M2_27
7.6
M2_28
7.6
M2_29
7.6
M2_30
7.5
M2_31
7.4
M2_32
7.4
M2_33
7.4
M2_34
7.3
M2_35
7.2
M2_36
7.1
M2_37
7.1
M2_38
7.0
M2_39
7.0
M2_40
7.0
M2_41
7.0
M2_42
7.0
M2_43
6.9
M2_44
6.9
M2_45
6.8
M2_46
6.7
M2_47
6.7
M2_48
6.7
M2_49
6.6
M2_50
6.6
M2_51
6.5
M2_52
6.5
M2_53
6.5
M2_54
6.4
M2_55
6.4
M2_56
6.4
M2_57
6.3
M2_58
6.2
M2_59
6.1
M2_60
6.1
M2_61
6.1
M2_62
6.1
M2_63
6.1
M2_64
5.9
M2_65
5.8
M2_66
5.8
M2_67
5.8
M2_68
5.8
M2_69
5.7
M2_70
5.7
M2_71
5.5
M2_72
5.4
M2_73
5.4
M2_74
5.4
M2_75
5.3
M2_76
5.2
M2_77
5.2
M2_78
5.1
M2_79
5.0
M2_80
5.0
M2_81
4.9
M2_82
4.9
M2_83
4.6
M2_84
4.6
M2_85
4.5
M2_86
4.4
M2_87
4.2
M2_88
4.0
M2_89
3.9
M2_90
3.3
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