A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.1
nTPM
Monaco:
26.5
nTPM
Schmiedel:
67.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.1
HPA sample
nTPM
Classical monocyte nTPM: 3.3
Samples: 6
Max nTPM: 4.0
Min nTPM: 2.0
P10809_1003
2.0
P10809_1020
4.0
P10809_1039
3.4
P10809_1058
2.9
P10809_1080
3.7
P10809_1107
3.6
Intermediate monocyte nTPM: 5.1
Samples: 6
Max nTPM: 9.5
Min nTPM: 2.8
P10809_1004
7.1
P10809_1023
3.3
P10809_1042
9.5
P10809_1061
3.5
P10809_1081
4.6
P10809_1108
2.8
Non-classical monocyte nTPM: 5.0
Samples: 5
Max nTPM: 8.6
Min nTPM: 1.9
P10809_1005
4.9
P10809_1053
8.6
P10809_1072
1.9
P10809_1082
5.5
P10809_1109
4.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.5
Monaco sample
nTPM
Classical monocyte nTPM: 19.6
Samples: 4
Max nTPM: 23.1
Min nTPM: 14.9
RHH5313_R3680
14.9
RHH5221_R3593
20.7
RHH5250_R3622
19.8
RHH5279_R3651
23.1
Intermediate monocyte nTPM: 26.5
Samples: 4
Max nTPM: 36.8
Min nTPM: 22.7
RHH5314_R3681
23.5
RHH5222_R3594
36.8
RHH5251_R3623
22.7
RHH5280_R3652
23.0
Non-classical monocyte nTPM: 25.0
Samples: 4
Max nTPM: 27.9
Min nTPM: 20.4
RHH5315_R3682
25.4
RHH5223_R3595
27.9
RHH5252_R3624
26.5
RHH5281_R3653
20.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.3
Schmiedel sample id
TPM
Classical monocyte TPM: 60.2
Samples: 91
Max TPM: 77.0
Min TPM: 47.5
MONOCYTES_1
77.0
MONOCYTES_2
72.1
MONOCYTES_3
71.8
MONOCYTES_4
70.3
MONOCYTES_5
69.3
MONOCYTES_6
68.1
MONOCYTES_7
67.5
MONOCYTES_8
66.5
MONOCYTES_9
66.4
MONOCYTES_10
65.8
MONOCYTES_11
65.7
MONOCYTES_12
65.6
MONOCYTES_13
65.6
MONOCYTES_14
65.5
MONOCYTES_15
65.4
MONOCYTES_16
65.4
MONOCYTES_17
65.3
MONOCYTES_18
65.0
MONOCYTES_19
64.9
MONOCYTES_20
64.8
MONOCYTES_21
64.7
MONOCYTES_22
64.6
MONOCYTES_23
64.5
MONOCYTES_24
64.4
MONOCYTES_25
64.3
MONOCYTES_26
64.2
MONOCYTES_27
64.0
MONOCYTES_28
63.2
MONOCYTES_29
62.3
MONOCYTES_30
62.0
MONOCYTES_31
61.9
MONOCYTES_32
61.9
MONOCYTES_33
61.8
MONOCYTES_34
61.6
MONOCYTES_35
61.5
MONOCYTES_36
61.3
MONOCYTES_37
61.3
MONOCYTES_38
61.3
MONOCYTES_39
61.1
MONOCYTES_40
60.7
MONOCYTES_41
60.7
MONOCYTES_42
60.6
MONOCYTES_43
60.4
MONOCYTES_44
60.2
MONOCYTES_45
60.0
MONOCYTES_46
60.0
MONOCYTES_47
59.8
MONOCYTES_48
59.6
MONOCYTES_49
59.3
MONOCYTES_50
59.2
MONOCYTES_51
59.2
MONOCYTES_52
59.1
MONOCYTES_53
58.8
MONOCYTES_54
58.8
MONOCYTES_55
58.7
MONOCYTES_56
58.7
MONOCYTES_57
58.7
MONOCYTES_58
58.5
MONOCYTES_59
58.5
MONOCYTES_60
58.5
MONOCYTES_61
58.4
MONOCYTES_62
58.3
MONOCYTES_63
58.3
MONOCYTES_64
57.7
MONOCYTES_65
57.4
MONOCYTES_66
57.3
MONOCYTES_67
57.2
MONOCYTES_68
57.1
MONOCYTES_69
56.8
MONOCYTES_70
56.7
MONOCYTES_71
56.5
MONOCYTES_72
56.1
MONOCYTES_73
55.6
MONOCYTES_74
55.2
MONOCYTES_75
55.2
MONOCYTES_76
54.9
MONOCYTES_77
54.6
MONOCYTES_78
54.4
MONOCYTES_79
54.1
MONOCYTES_80
53.8
MONOCYTES_81
53.4
MONOCYTES_82
52.8
MONOCYTES_83
52.5
MONOCYTES_84
52.5
MONOCYTES_85
52.4
MONOCYTES_86
51.1
MONOCYTES_87
50.8
MONOCYTES_88
50.3
MONOCYTES_89
48.8
MONOCYTES_90
48.3
MONOCYTES_91
47.5
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Non-classical monocyte TPM: 67.3
Samples: 90
Max TPM: 80.4
Min TPM: 46.3
M2_1
80.4
M2_2
79.8
M2_3
79.1
M2_4
78.8
M2_5
78.0
M2_6
77.9
M2_7
77.0
M2_8
75.8
M2_9
75.8
M2_10
75.7
M2_11
75.3
M2_12
75.2
M2_13
75.2
M2_14
74.5
M2_15
74.5
M2_16
74.5
M2_17
74.5
M2_18
73.6
M2_19
73.6
M2_20
73.4
M2_21
73.4
M2_22
73.0
M2_23
73.0
M2_24
72.9
M2_25
72.8
M2_26
72.2
M2_27
72.1
M2_28
71.9
M2_29
71.5
M2_30
71.3
M2_31
71.0
M2_32
70.9
M2_33
70.9
M2_34
70.8
M2_35
70.6
M2_36
70.4
M2_37
70.4
M2_38
70.2
M2_39
70.1
M2_40
70.1
M2_41
69.4
M2_42
69.3
M2_43
69.0
M2_44
68.7
M2_45
68.7
M2_46
68.7
M2_47
68.5
M2_48
68.5
M2_49
68.2
M2_50
67.1
M2_51
67.1
M2_52
66.9
M2_53
66.9
M2_54
66.9
M2_55
66.6
M2_56
66.4
M2_57
66.2
M2_58
65.8
M2_59
65.5
M2_60
65.5
M2_61
65.2
M2_62
65.1
M2_63
64.9
M2_64
64.4
M2_65
64.2
M2_66
63.5
M2_67
63.5
M2_68
63.4
M2_69
62.3
M2_70
62.2
M2_71
61.9
M2_72
60.5
M2_73
59.2
M2_74
58.6
M2_75
58.3
M2_76
57.5
M2_77
57.5
M2_78
57.2
M2_79
57.2
M2_80
57.0
M2_81
56.1
M2_82
55.7
M2_83
54.9
M2_84
54.3
M2_85
54.1
M2_86
53.7
M2_87
53.2
M2_88
51.8
M2_89
50.3
M2_90
46.3
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