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BETA
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  • OTUD5
IMMUNE CELL MONOCYTES Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
Monocytes
Immune cell methods
MONOCYTES - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:5.1 nTPM
Monaco:26.5 nTPM
Schmiedel:67.3 TPM

MONOCYTES - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

5.1
HPA sample nTPM
Classical monocyte
nTPM: 3.3
Samples: 6

Max nTPM: 4.0
Min nTPM: 2.0
P10809_1003 2.0
P10809_1020 4.0
P10809_1039 3.4
P10809_1058 2.9
P10809_1080 3.7
P10809_1107 3.6
Intermediate monocyte
nTPM: 5.1
Samples: 6

Max nTPM: 9.5
Min nTPM: 2.8
P10809_1004 7.1
P10809_1023 3.3
P10809_1042 9.5
P10809_1061 3.5
P10809_1081 4.6
P10809_1108 2.8
Non-classical monocyte
nTPM: 5.0
Samples: 5

Max nTPM: 8.6
Min nTPM: 1.9
P10809_1005 4.9
P10809_1053 8.6
P10809_1072 1.9
P10809_1082 5.5
P10809_1109 4.2

MONOCYTES - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

26.5
Monaco sample nTPM
Classical monocyte
nTPM: 19.6
Samples: 4

Max nTPM: 23.1
Min nTPM: 14.9
RHH5313_R3680 14.9
RHH5221_R3593 20.7
RHH5250_R3622 19.8
RHH5279_R3651 23.1
Intermediate monocyte
nTPM: 26.5
Samples: 4

Max nTPM: 36.8
Min nTPM: 22.7
RHH5314_R3681 23.5
RHH5222_R3594 36.8
RHH5251_R3623 22.7
RHH5280_R3652 23.0
Non-classical monocyte
nTPM: 25.0
Samples: 4

Max nTPM: 27.9
Min nTPM: 20.4
RHH5315_R3682 25.4
RHH5223_R3595 27.9
RHH5252_R3624 26.5
RHH5281_R3653 20.4

MONOCYTES - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

67.3
Schmiedel sample id TPM
Classical monocyte
TPM: 60.2
Samples: 91

Max TPM: 77.0
Min TPM: 47.5
MONOCYTES_1 77.0
MONOCYTES_2 72.1
MONOCYTES_3 71.8
MONOCYTES_4 70.3
MONOCYTES_5 69.3
MONOCYTES_6 68.1
MONOCYTES_7 67.5
MONOCYTES_8 66.5
MONOCYTES_9 66.4
MONOCYTES_10 65.8
MONOCYTES_11 65.7
MONOCYTES_12 65.6
MONOCYTES_13 65.6
MONOCYTES_14 65.5
MONOCYTES_15 65.4
MONOCYTES_16 65.4
MONOCYTES_17 65.3
MONOCYTES_18 65.0
MONOCYTES_19 64.9
MONOCYTES_20 64.8
MONOCYTES_21 64.7
MONOCYTES_22 64.6
MONOCYTES_23 64.5
MONOCYTES_24 64.4
MONOCYTES_25 64.3
MONOCYTES_26 64.2
MONOCYTES_27 64.0
MONOCYTES_28 63.2
MONOCYTES_29 62.3
MONOCYTES_30 62.0
MONOCYTES_31 61.9
MONOCYTES_32 61.9
MONOCYTES_33 61.8
MONOCYTES_34 61.6
MONOCYTES_35 61.5
MONOCYTES_36 61.3
MONOCYTES_37 61.3
MONOCYTES_38 61.3
MONOCYTES_39 61.1
MONOCYTES_40 60.7
MONOCYTES_41 60.7
MONOCYTES_42 60.6
MONOCYTES_43 60.4
MONOCYTES_44 60.2
MONOCYTES_45 60.0
MONOCYTES_46 60.0
MONOCYTES_47 59.8
MONOCYTES_48 59.6
MONOCYTES_49 59.3
MONOCYTES_50 59.2
MONOCYTES_51 59.2
MONOCYTES_52 59.1
MONOCYTES_53 58.8
MONOCYTES_54 58.8
MONOCYTES_55 58.7
MONOCYTES_56 58.7
MONOCYTES_57 58.7
MONOCYTES_58 58.5
MONOCYTES_59 58.5
MONOCYTES_60 58.5
MONOCYTES_61 58.4
MONOCYTES_62 58.3
MONOCYTES_63 58.3
MONOCYTES_64 57.7
MONOCYTES_65 57.4
MONOCYTES_66 57.3
MONOCYTES_67 57.2
MONOCYTES_68 57.1
MONOCYTES_69 56.8
MONOCYTES_70 56.7
MONOCYTES_71 56.5
MONOCYTES_72 56.1
MONOCYTES_73 55.6
MONOCYTES_74 55.2
MONOCYTES_75 55.2
MONOCYTES_76 54.9
MONOCYTES_77 54.6
MONOCYTES_78 54.4
MONOCYTES_79 54.1
MONOCYTES_80 53.8
MONOCYTES_81 53.4
MONOCYTES_82 52.8
MONOCYTES_83 52.5
MONOCYTES_84 52.5
MONOCYTES_85 52.4
MONOCYTES_86 51.1
MONOCYTES_87 50.8
MONOCYTES_88 50.3
MONOCYTES_89 48.8
MONOCYTES_90 48.3
MONOCYTES_91 47.5
Show allShow less
Non-classical monocyte
TPM: 67.3
Samples: 90

Max TPM: 80.4
Min TPM: 46.3
M2_1 80.4
M2_2 79.8
M2_3 79.1
M2_4 78.8
M2_5 78.0
M2_6 77.9
M2_7 77.0
M2_8 75.8
M2_9 75.8
M2_10 75.7
M2_11 75.3
M2_12 75.2
M2_13 75.2
M2_14 74.5
M2_15 74.5
M2_16 74.5
M2_17 74.5
M2_18 73.6
M2_19 73.6
M2_20 73.4
M2_21 73.4
M2_22 73.0
M2_23 73.0
M2_24 72.9
M2_25 72.8
M2_26 72.2
M2_27 72.1
M2_28 71.9
M2_29 71.5
M2_30 71.3
M2_31 71.0
M2_32 70.9
M2_33 70.9
M2_34 70.8
M2_35 70.6
M2_36 70.4
M2_37 70.4
M2_38 70.2
M2_39 70.1
M2_40 70.1
M2_41 69.4
M2_42 69.3
M2_43 69.0
M2_44 68.7
M2_45 68.7
M2_46 68.7
M2_47 68.5
M2_48 68.5
M2_49 68.2
M2_50 67.1
M2_51 67.1
M2_52 66.9
M2_53 66.9
M2_54 66.9
M2_55 66.6
M2_56 66.4
M2_57 66.2
M2_58 65.8
M2_59 65.5
M2_60 65.5
M2_61 65.2
M2_62 65.1
M2_63 64.9
M2_64 64.4
M2_65 64.2
M2_66 63.5
M2_67 63.5
M2_68 63.4
M2_69 62.3
M2_70 62.2
M2_71 61.9
M2_72 60.5
M2_73 59.2
M2_74 58.6
M2_75 58.3
M2_76 57.5
M2_77 57.5
M2_78 57.2
M2_79 57.2
M2_80 57.0
M2_81 56.1
M2_82 55.7
M2_83 54.9
M2_84 54.3
M2_85 54.1
M2_86 53.7
M2_87 53.2
M2_88 51.8
M2_89 50.3
M2_90 46.3
Show allShow less

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