A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.5
nTPM
Monaco:
91.2
nTPM
Schmiedel:
116.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.5
HPA sample
nTPM
Classical monocyte nTPM: 10.8
Samples: 6
Max nTPM: 15.1
Min nTPM: 8.0
P10809_1003
15.1
P10809_1020
9.9
P10809_1039
10.5
P10809_1058
10.4
P10809_1080
11.1
P10809_1107
8.0
Intermediate monocyte nTPM: 15.5
Samples: 6
Max nTPM: 29.3
Min nTPM: 8.9
P10809_1004
14.7
P10809_1023
10.1
P10809_1042
17.8
P10809_1061
29.3
P10809_1081
12.3
P10809_1108
8.9
Non-classical monocyte nTPM: 19.5
Samples: 5
Max nTPM: 39.6
Min nTPM: 10.6
P10809_1005
16.7
P10809_1053
18.5
P10809_1072
39.6
P10809_1082
12.2
P10809_1109
10.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.2
Monaco sample
nTPM
Classical monocyte nTPM: 85.7
Samples: 4
Max nTPM: 109.0
Min nTPM: 69.1
RHH5313_R3680
69.1
RHH5221_R3593
109.0
RHH5250_R3622
83.7
RHH5279_R3651
80.8
Intermediate monocyte nTPM: 78.6
Samples: 4
Max nTPM: 108.9
Min nTPM: 64.7
RHH5314_R3681
72.2
RHH5222_R3594
108.9
RHH5251_R3623
64.7
RHH5280_R3652
68.4
Non-classical monocyte nTPM: 91.2
Samples: 4
Max nTPM: 127.7
Min nTPM: 73.2
RHH5315_R3682
83.8
RHH5223_R3595
127.7
RHH5252_R3624
80.1
RHH5281_R3653
73.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.2
Schmiedel sample id
TPM
Classical monocyte TPM: 69.5
Samples: 91
Max TPM: 100.6
Min TPM: 46.9
MONOCYTES_1
100.6
MONOCYTES_2
92.9
MONOCYTES_3
91.4
MONOCYTES_4
90.4
MONOCYTES_5
90.1
MONOCYTES_6
89.3
MONOCYTES_7
88.9
MONOCYTES_8
85.9
MONOCYTES_9
85.7
MONOCYTES_10
83.7
MONOCYTES_11
83.6
MONOCYTES_12
81.5
MONOCYTES_13
81.5
MONOCYTES_14
81.2
MONOCYTES_15
80.7
MONOCYTES_16
80.4
MONOCYTES_17
79.6
MONOCYTES_18
78.6
MONOCYTES_19
77.9
MONOCYTES_20
77.7
MONOCYTES_21
77.2
MONOCYTES_22
76.9
MONOCYTES_23
76.8
MONOCYTES_24
76.6
MONOCYTES_25
75.5
MONOCYTES_26
75.3
MONOCYTES_27
75.2
MONOCYTES_28
74.7
MONOCYTES_29
74.6
MONOCYTES_30
74.5
MONOCYTES_31
74.4
MONOCYTES_32
73.7
MONOCYTES_33
73.6
MONOCYTES_34
71.6
MONOCYTES_35
71.2
MONOCYTES_36
71.1
MONOCYTES_37
71.1
MONOCYTES_38
71.0
MONOCYTES_39
70.9
MONOCYTES_40
70.9
MONOCYTES_41
70.6
MONOCYTES_42
70.0
MONOCYTES_43
69.9
MONOCYTES_44
69.1
MONOCYTES_45
69.0
MONOCYTES_46
69.0
MONOCYTES_47
68.6
MONOCYTES_48
68.3
MONOCYTES_49
68.2
MONOCYTES_50
68.0
MONOCYTES_51
67.9
MONOCYTES_52
67.9
MONOCYTES_53
67.7
MONOCYTES_54
66.5
MONOCYTES_55
66.5
MONOCYTES_56
65.9
MONOCYTES_57
65.7
MONOCYTES_58
65.4
MONOCYTES_59
65.4
MONOCYTES_60
64.9
MONOCYTES_61
64.3
MONOCYTES_62
63.9
MONOCYTES_63
63.7
MONOCYTES_64
63.5
MONOCYTES_65
63.3
MONOCYTES_66
63.2
MONOCYTES_67
62.6
MONOCYTES_68
61.1
MONOCYTES_69
60.9
MONOCYTES_70
60.8
MONOCYTES_71
60.7
MONOCYTES_72
60.4
MONOCYTES_73
60.0
MONOCYTES_74
59.7
MONOCYTES_75
58.7
MONOCYTES_76
58.6
MONOCYTES_77
58.6
MONOCYTES_78
57.4
MONOCYTES_79
57.1
MONOCYTES_80
56.7
MONOCYTES_81
56.7
MONOCYTES_82
56.1
MONOCYTES_83
55.0
MONOCYTES_84
52.6
MONOCYTES_85
52.5
MONOCYTES_86
52.2
MONOCYTES_87
51.9
MONOCYTES_88
51.1
MONOCYTES_89
49.0
MONOCYTES_90
48.3
MONOCYTES_91
46.9
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Non-classical monocyte TPM: 116.2
Samples: 90
Max TPM: 182.1
Min TPM: 65.7
M2_1
182.1
M2_2
179.1
M2_3
173.6
M2_4
171.7
M2_5
165.0
M2_6
163.4
M2_7
158.3
M2_8
152.7
M2_9
152.0
M2_10
149.6
M2_11
148.7
M2_12
148.7
M2_13
143.5
M2_14
138.4
M2_15
134.7
M2_16
131.8
M2_17
131.1
M2_18
130.4
M2_19
128.6
M2_20
128.3
M2_21
127.2
M2_22
127.1
M2_23
126.5
M2_24
125.1
M2_25
123.6
M2_26
123.3
M2_27
122.5
M2_28
120.5
M2_29
120.1
M2_30
120.1
M2_31
119.6
M2_32
119.3
M2_33
118.6
M2_34
118.0
M2_35
117.8
M2_36
117.4
M2_37
116.4
M2_38
115.8
M2_39
115.6
M2_40
114.7
M2_41
114.2
M2_42
113.2
M2_43
113.1
M2_44
113.0
M2_45
112.8
M2_46
112.4
M2_47
111.6
M2_48
111.1
M2_49
111.0
M2_50
110.7
M2_51
110.7
M2_52
108.8
M2_53
108.7
M2_54
107.9
M2_55
107.4
M2_56
107.2
M2_57
105.9
M2_58
105.9
M2_59
103.6
M2_60
103.6
M2_61
102.2
M2_62
101.9
M2_63
101.7
M2_64
101.4
M2_65
101.0
M2_66
100.7
M2_67
100.4
M2_68
100.2
M2_69
100.1
M2_70
99.9
M2_71
99.1
M2_72
99.0
M2_73
99.0
M2_74
98.7
M2_75
97.6
M2_76
97.2
M2_77
95.8
M2_78
94.6
M2_79
93.6
M2_80
93.6
M2_81
93.4
M2_82
92.4
M2_83
89.3
M2_84
88.6
M2_85
88.4
M2_86
88.1
M2_87
88.0
M2_88
87.9
M2_89
82.3
M2_90
65.7
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