A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
36.0
nTPM
Monaco:
44.9
nTPM
Schmiedel:
29.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.0
HPA sample
nTPM
Classical monocyte nTPM: 22.3
Samples: 6
Max nTPM: 36.5
Min nTPM: 14.5
P10809_1003
17.2
P10809_1020
21.6
P10809_1039
36.5
P10809_1058
14.5
P10809_1080
19.8
P10809_1107
24.2
Intermediate monocyte nTPM: 31.5
Samples: 6
Max nTPM: 41.3
Min nTPM: 17.5
P10809_1004
27.2
P10809_1023
32.6
P10809_1042
41.3
P10809_1061
37.5
P10809_1081
17.5
P10809_1108
32.6
Non-classical monocyte nTPM: 36.0
Samples: 5
Max nTPM: 49.7
Min nTPM: 23.1
P10809_1005
31.3
P10809_1053
44.7
P10809_1072
49.7
P10809_1082
23.1
P10809_1109
31.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.9
Monaco sample
nTPM
Classical monocyte nTPM: 44.9
Samples: 4
Max nTPM: 47.6
Min nTPM: 42.5
RHH5313_R3680
44.1
RHH5221_R3593
45.4
RHH5250_R3622
47.6
RHH5279_R3651
42.5
Intermediate monocyte nTPM: 38.3
Samples: 4
Max nTPM: 46.4
Min nTPM: 32.7
RHH5314_R3681
35.2
RHH5222_R3594
38.7
RHH5251_R3623
32.7
RHH5280_R3652
46.4
Non-classical monocyte nTPM: 44.4
Samples: 4
Max nTPM: 45.8
Min nTPM: 42.0
RHH5315_R3682
45.8
RHH5223_R3595
42.0
RHH5252_R3624
44.9
RHH5281_R3653
45.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.8
Schmiedel sample id
TPM
Classical monocyte TPM: 21.6
Samples: 91
Max TPM: 32.9
Min TPM: 12.8
MONOCYTES_1
32.9
MONOCYTES_2
32.9
MONOCYTES_3
30.8
MONOCYTES_4
30.7
MONOCYTES_5
29.8
MONOCYTES_6
29.3
MONOCYTES_7
29.1
MONOCYTES_8
28.4
MONOCYTES_9
28.1
MONOCYTES_10
28.0
MONOCYTES_11
27.2
MONOCYTES_12
27.1
MONOCYTES_13
27.0
MONOCYTES_14
26.9
MONOCYTES_15
26.4
MONOCYTES_16
25.7
MONOCYTES_17
25.7
MONOCYTES_18
25.4
MONOCYTES_19
25.0
MONOCYTES_20
24.9
MONOCYTES_21
24.8
MONOCYTES_22
24.7
MONOCYTES_23
24.4
MONOCYTES_24
24.4
MONOCYTES_25
24.4
MONOCYTES_26
23.9
MONOCYTES_27
23.7
MONOCYTES_28
23.7
MONOCYTES_29
23.6
MONOCYTES_30
23.4
MONOCYTES_31
23.1
MONOCYTES_32
23.0
MONOCYTES_33
22.9
MONOCYTES_34
22.9
MONOCYTES_35
22.8
MONOCYTES_36
22.7
MONOCYTES_37
22.6
MONOCYTES_38
22.3
MONOCYTES_39
22.2
MONOCYTES_40
22.0
MONOCYTES_41
21.8
MONOCYTES_42
21.8
MONOCYTES_43
21.7
MONOCYTES_44
21.7
MONOCYTES_45
21.7
MONOCYTES_46
21.6
MONOCYTES_47
21.5
MONOCYTES_48
21.0
MONOCYTES_49
21.0
MONOCYTES_50
20.9
MONOCYTES_51
20.7
MONOCYTES_52
20.6
MONOCYTES_53
20.0
MONOCYTES_54
19.9
MONOCYTES_55
19.8
MONOCYTES_56
19.8
MONOCYTES_57
19.8
MONOCYTES_58
19.7
MONOCYTES_59
19.7
MONOCYTES_60
19.4
MONOCYTES_61
19.3
MONOCYTES_62
19.3
MONOCYTES_63
19.3
MONOCYTES_64
19.1
MONOCYTES_65
19.0
MONOCYTES_66
18.9
MONOCYTES_67
18.8
MONOCYTES_68
18.5
MONOCYTES_69
18.5
MONOCYTES_70
18.4
MONOCYTES_71
18.3
MONOCYTES_72
18.1
MONOCYTES_73
18.0
MONOCYTES_74
17.8
MONOCYTES_75
17.6
MONOCYTES_76
17.3
MONOCYTES_77
17.1
MONOCYTES_78
16.4
MONOCYTES_79
16.4
MONOCYTES_80
16.0
MONOCYTES_81
15.8
MONOCYTES_82
15.5
MONOCYTES_83
15.4
MONOCYTES_84
15.3
MONOCYTES_85
15.1
MONOCYTES_86
14.9
MONOCYTES_87
14.1
MONOCYTES_88
13.8
MONOCYTES_89
13.4
MONOCYTES_90
13.1
MONOCYTES_91
12.8
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Non-classical monocyte TPM: 29.8
Samples: 90
Max TPM: 51.3
Min TPM: 13.1
M2_1
51.3
M2_2
49.5
M2_3
44.9
M2_4
42.1
M2_5
41.7
M2_6
40.5
M2_7
40.5
M2_8
39.8
M2_9
39.6
M2_10
39.2
M2_11
38.8
M2_12
38.5
M2_13
37.8
M2_14
37.6
M2_15
37.5
M2_16
37.5
M2_17
37.4
M2_18
37.3
M2_19
37.0
M2_20
36.7
M2_21
35.6
M2_22
35.4
M2_23
35.2
M2_24
35.1
M2_25
34.9
M2_26
34.9
M2_27
34.6
M2_28
34.2
M2_29
34.0
M2_30
33.4
M2_31
33.3
M2_32
33.2
M2_33
32.4
M2_34
32.2
M2_35
32.2
M2_36
31.6
M2_37
31.2
M2_38
31.1
M2_39
31.0
M2_40
30.8
M2_41
30.5
M2_42
30.4
M2_43
30.3
M2_44
30.3
M2_45
30.3
M2_46
30.2
M2_47
30.0
M2_48
29.3
M2_49
29.2
M2_50
29.0
M2_51
28.8
M2_52
28.2
M2_53
28.1
M2_54
27.8
M2_55
27.6
M2_56
27.4
M2_57
27.2
M2_58
26.6
M2_59
26.1
M2_60
26.0
M2_61
25.9
M2_62
25.7
M2_63
25.6
M2_64
25.1
M2_65
25.0
M2_66
24.8
M2_67
24.6
M2_68
24.3
M2_69
24.1
M2_70
24.0
M2_71
23.9
M2_72
23.4
M2_73
23.3
M2_74
22.8
M2_75
22.2
M2_76
22.2
M2_77
21.8
M2_78
21.7
M2_79
20.7
M2_80
20.7
M2_81
19.2
M2_82
19.2
M2_83
18.8
M2_84
18.5
M2_85
16.4
M2_86
15.8
M2_87
15.2
M2_88
15.1
M2_89
14.0
M2_90
13.1
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