A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.6
nTPM
Monaco:
26.8
nTPM
Schmiedel:
26.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.6
HPA sample
nTPM
Classical monocyte nTPM: 2.0
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.8
P10809_1003
2.6
P10809_1020
2.4
P10809_1039
0.8
P10809_1058
2.5
P10809_1080
2.1
P10809_1107
1.8
Intermediate monocyte nTPM: 3.9
Samples: 6
Max nTPM: 7.3
Min nTPM: 0.6
P10809_1004
7.3
P10809_1023
0.6
P10809_1042
2.8
P10809_1061
4.9
P10809_1081
5.6
P10809_1108
2.5
Non-classical monocyte nTPM: 9.6
Samples: 5
Max nTPM: 31.4
Min nTPM: 2.5
P10809_1005
6.0
P10809_1053
2.5
P10809_1072
31.4
P10809_1082
4.7
P10809_1109
3.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.8
Monaco sample
nTPM
Classical monocyte nTPM: 8.9
Samples: 4
Max nTPM: 9.6
Min nTPM: 7.2
RHH5313_R3680
9.6
RHH5221_R3593
9.4
RHH5250_R3622
9.5
RHH5279_R3651
7.2
Intermediate monocyte nTPM: 19.6
Samples: 4
Max nTPM: 26.8
Min nTPM: 14.3
RHH5314_R3681
18.9
RHH5222_R3594
26.8
RHH5251_R3623
14.3
RHH5280_R3652
18.4
Non-classical monocyte nTPM: 26.8
Samples: 4
Max nTPM: 33.9
Min nTPM: 16.2
RHH5315_R3682
16.2
RHH5223_R3595
32.9
RHH5252_R3624
24.1
RHH5281_R3653
33.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.8
Schmiedel sample id
TPM
Classical monocyte TPM: 7.9
Samples: 91
Max TPM: 12.0
Min TPM: 4.4
MONOCYTES_1
12.0
MONOCYTES_2
11.0
MONOCYTES_3
10.9
MONOCYTES_4
10.5
MONOCYTES_5
10.5
MONOCYTES_6
10.2
MONOCYTES_7
10.2
MONOCYTES_8
10.2
MONOCYTES_9
10.1
MONOCYTES_10
10.0
MONOCYTES_11
10.0
MONOCYTES_12
10.0
MONOCYTES_13
9.8
MONOCYTES_14
9.7
MONOCYTES_15
9.7
MONOCYTES_16
9.6
MONOCYTES_17
9.4
MONOCYTES_18
9.3
MONOCYTES_19
9.3
MONOCYTES_20
9.3
MONOCYTES_21
9.3
MONOCYTES_22
9.2
MONOCYTES_23
9.1
MONOCYTES_24
9.0
MONOCYTES_25
8.9
MONOCYTES_26
8.7
MONOCYTES_27
8.5
MONOCYTES_28
8.4
MONOCYTES_29
8.4
MONOCYTES_30
8.3
MONOCYTES_31
8.3
MONOCYTES_32
8.3
MONOCYTES_33
8.3
MONOCYTES_34
8.3
MONOCYTES_35
8.2
MONOCYTES_36
8.1
MONOCYTES_37
8.1
MONOCYTES_38
8.1
MONOCYTES_39
8.1
MONOCYTES_40
8.0
MONOCYTES_41
7.9
MONOCYTES_42
7.9
MONOCYTES_43
7.9
MONOCYTES_44
7.9
MONOCYTES_45
7.8
MONOCYTES_46
7.8
MONOCYTES_47
7.8
MONOCYTES_48
7.5
MONOCYTES_49
7.4
MONOCYTES_50
7.4
MONOCYTES_51
7.4
MONOCYTES_52
7.4
MONOCYTES_53
7.4
MONOCYTES_54
7.4
MONOCYTES_55
7.3
MONOCYTES_56
7.3
MONOCYTES_57
7.3
MONOCYTES_58
7.2
MONOCYTES_59
7.2
MONOCYTES_60
7.1
MONOCYTES_61
7.1
MONOCYTES_62
7.0
MONOCYTES_63
7.0
MONOCYTES_64
7.0
MONOCYTES_65
7.0
MONOCYTES_66
6.9
MONOCYTES_67
6.9
MONOCYTES_68
6.9
MONOCYTES_69
6.8
MONOCYTES_70
6.8
MONOCYTES_71
6.7
MONOCYTES_72
6.5
MONOCYTES_73
6.5
MONOCYTES_74
6.5
MONOCYTES_75
6.4
MONOCYTES_76
6.4
MONOCYTES_77
6.3
MONOCYTES_78
6.2
MONOCYTES_79
6.2
MONOCYTES_80
6.0
MONOCYTES_81
6.0
MONOCYTES_82
5.8
MONOCYTES_83
5.8
MONOCYTES_84
5.8
MONOCYTES_85
5.7
MONOCYTES_86
5.6
MONOCYTES_87
5.6
MONOCYTES_88
5.5
MONOCYTES_89
5.0
MONOCYTES_90
4.6
MONOCYTES_91
4.4
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Non-classical monocyte TPM: 26.8
Samples: 90
Max TPM: 38.7
Min TPM: 16.9
M2_1
38.7
M2_2
38.5
M2_3
38.3
M2_4
36.8
M2_5
36.8
M2_6
35.9
M2_7
35.5
M2_8
35.2
M2_9
35.2
M2_10
34.7
M2_11
34.1
M2_12
33.7
M2_13
33.6
M2_14
33.1
M2_15
33.0
M2_16
32.2
M2_17
31.8
M2_18
31.6
M2_19
31.5
M2_20
31.5
M2_21
30.8
M2_22
30.7
M2_23
30.7
M2_24
30.3
M2_25
30.0
M2_26
29.9
M2_27
29.8
M2_28
29.7
M2_29
29.2
M2_30
29.0
M2_31
29.0
M2_32
28.8
M2_33
28.3
M2_34
28.2
M2_35
28.2
M2_36
28.1
M2_37
28.1
M2_38
27.9
M2_39
27.8
M2_40
27.8
M2_41
27.8
M2_42
27.7
M2_43
27.1
M2_44
27.0
M2_45
26.8
M2_46
26.6
M2_47
26.4
M2_48
26.1
M2_49
25.9
M2_50
25.9
M2_51
25.7
M2_52
25.7
M2_53
25.5
M2_54
25.5
M2_55
25.5
M2_56
25.4
M2_57
25.2
M2_58
24.4
M2_59
24.1
M2_60
23.9
M2_61
23.4
M2_62
23.4
M2_63
23.3
M2_64
23.2
M2_65
23.2
M2_66
22.7
M2_67
22.6
M2_68
22.3
M2_69
22.2
M2_70
21.8
M2_71
21.6
M2_72
21.4
M2_73
21.4
M2_74
21.3
M2_75
20.8
M2_76
20.7
M2_77
20.7
M2_78
20.5
M2_79
20.4
M2_80
20.3
M2_81
19.9
M2_82
19.8
M2_83
19.7
M2_84
18.8
M2_85
18.6
M2_86
18.5
M2_87
18.4
M2_88
18.1
M2_89
17.7
M2_90
16.9
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