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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

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  • EVOLUTION

  • LAPTM4A
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:86.4 nTPM
GTEx:117.1 nTPM
FANTOM5:109.7 Scaled Tags Per Million
Macaque:117.7 nTPM
Pig:179.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

86.4
Sample id Sample description nTPM
Substantia nigra
nTPM: 86.4
2241 Male, age 72, unknown 104.9
1916 Female, age 42, unknown 101.9
2665 Male, age 74, both hemispheres 94.8
1851 Male, age 51, unknown 93.4
2699 Male, age 18, unknown 92.4
1889 Female, age 72, unknown 84.7
1941 Male, age 53, unknown 84.3
2409 Female, age 72, unknown 80.6
2590 Female, age 75, unknown 71.4
2583 Male, age 75, right hemisphere 55.3

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 117.1
Samples: 183

Max nTPM: 264.9
Min nTPM: 32.9
Std nTPM: 38.9
Median nTPM: 108.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 264.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 261.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 260.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 238.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 233.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 223.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 206.2
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 201.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 197.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 193.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 193.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 192.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 190.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 182.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 181.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 174.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 170.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 169.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 166.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 161.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 161.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 158.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 155.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 155.3
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 151.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 147.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 147.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 147.2
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 146.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 146.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 143.4
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 142.3
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 139.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 139.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 139.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 138.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 138.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 137.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 137.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 136.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 135.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 135.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 134.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 134.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 134.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 133.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 133.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 132.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 132.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 130.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 130.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 129.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 129.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 129.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 128.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 127.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 125.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 124.1
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 123.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 122.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 122.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 122.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 121.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 121.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 120.7
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 120.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 118.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 118.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 118.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 117.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 117.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 116.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 116.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 115.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 115.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 115.0
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 114.8
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 114.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 114.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 113.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 112.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 111.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 111.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 110.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 110.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 109.8
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 109.7
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 109.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 109.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 108.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 108.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 108.4
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 108.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 108.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 107.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 107.6
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 107.6
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 107.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 107.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 106.9
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 106.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 106.8
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 106.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 105.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 105.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 105.2
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 105.0
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 105.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 103.8
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 103.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 102.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 102.2
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 102.1
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 102.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 101.8
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 101.7
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 101.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 101.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 100.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 100.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 99.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 99.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 99.3
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 98.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 98.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 98.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 98.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 97.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 97.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 96.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 96.2
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 95.9
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 95.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 95.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 95.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 94.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 94.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 92.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 92.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 92.1
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 91.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 91.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 91.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 90.8
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 90.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 90.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 89.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 89.0
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 88.2
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 88.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 87.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 87.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 86.5
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 86.3
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 86.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 85.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 84.3
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 81.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 80.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 79.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 79.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 78.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 77.3
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 76.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 75.5
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 74.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 74.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 73.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 72.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 71.6
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 71.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 71.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 71.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 70.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 69.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 67.1
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 66.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 66.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 65.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 64.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 59.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 48.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 32.9
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.7
FF:10158-103A5 76 years, female 109.7

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 117.7
Samples: 1

Max nTPM: 117.7
Min nTPM: 117.7
Sample A 117.7

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 179.6
Samples: 3

Max nTPM: 195.5
Min nTPM: 162.4
Sample A Female 195.5
Sample B Female 180.9
Sample C Male 162.4

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