A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.9
nTPM
Monaco:
16.3
nTPM
Schmiedel:
122.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.9
HPA sample
nTPM
Memory B-cell nTPM: 0.6
Samples: 6
Max nTPM: 1.2
Min nTPM: 0.0
P10809_1017
0.8
P10809_1025
0.3
P10809_1044
0.0
P10809_1063
1.2
P10809_1092
0.9
P10809_1105
0.7
Naive B-cell nTPM: 0.9
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.3
P10809_1011
1.0
P10809_1029
0.7
P10809_1048
0.3
P10809_1067
1.8
P10809_1091
0.6
P10809_1104
1.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 10.2
Samples: 4
Max nTPM: 18.6
Min nTPM: 6.3
RHH5310_R3677
6.3
RHH5218_R3590
8.7
RHH5247_R3619
7.3
RHH5276_R3648
18.6
Naive B-cell nTPM: 16.4
Samples: 4
Max nTPM: 25.8
Min nTPM: 11.3
RHH5308_R3675
11.4
RHH5216_R3588
11.3
RHH5245_R3617
25.8
RHH5274_R3646
16.9
Non-switched memory B-cell nTPM: 14.4
Samples: 4
Max nTPM: 18.6
Min nTPM: 11.4
RHH5309_R3676
12.0
RHH5217_R3589
11.4
RHH5246_R3618
15.5
RHH5275_R3647
18.6
Plasmablast nTPM: 6.0
Samples: 4
Max nTPM: 7.7
Min nTPM: 3.2
RHH5312_R3679
3.2
RHH5220_R3592
5.5
RHH5249_R3621
7.6
RHH5278_R3650
7.7
Switched memory B-cell nTPM: 11.5
Samples: 4
Max nTPM: 18.8
Min nTPM: 5.5
RHH5311_R3678
5.5
RHH5219_R3591
18.8
RHH5248_R3620
10.1
RHH5277_R3649
11.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.2
Schmiedel sample id
TPM
Naive B-cell TPM: 122.2
Samples: 91
Max TPM: 191.6
Min TPM: 81.9
B_CELL_NAIVE_1
191.6
B_CELL_NAIVE_2
180.3
B_CELL_NAIVE_3
179.1
B_CELL_NAIVE_4
159.2
B_CELL_NAIVE_5
158.3
B_CELL_NAIVE_6
158.2
B_CELL_NAIVE_7
156.7
B_CELL_NAIVE_8
150.3
B_CELL_NAIVE_9
150.2
B_CELL_NAIVE_10
150.1
B_CELL_NAIVE_11
143.4
B_CELL_NAIVE_12
142.4
B_CELL_NAIVE_13
142.1
B_CELL_NAIVE_14
141.7
B_CELL_NAIVE_15
137.1
B_CELL_NAIVE_16
135.6
B_CELL_NAIVE_17
135.5
B_CELL_NAIVE_18
135.0
B_CELL_NAIVE_19
134.0
B_CELL_NAIVE_20
133.9
B_CELL_NAIVE_21
133.4
B_CELL_NAIVE_22
133.3
B_CELL_NAIVE_23
132.3
B_CELL_NAIVE_24
132.0
B_CELL_NAIVE_25
132.0
B_CELL_NAIVE_26
131.4
B_CELL_NAIVE_27
131.0
B_CELL_NAIVE_28
129.8
B_CELL_NAIVE_29
129.2
B_CELL_NAIVE_30
128.7
B_CELL_NAIVE_31
128.0
B_CELL_NAIVE_32
127.9
B_CELL_NAIVE_33
127.4
B_CELL_NAIVE_34
127.0
B_CELL_NAIVE_35
126.6
B_CELL_NAIVE_36
126.3
B_CELL_NAIVE_37
125.9
B_CELL_NAIVE_38
125.8
B_CELL_NAIVE_39
125.1
B_CELL_NAIVE_40
124.9
B_CELL_NAIVE_41
123.6
B_CELL_NAIVE_42
123.4
B_CELL_NAIVE_43
121.2
B_CELL_NAIVE_44
121.0
B_CELL_NAIVE_45
120.9
B_CELL_NAIVE_46
120.0
B_CELL_NAIVE_47
119.2
B_CELL_NAIVE_48
119.0
B_CELL_NAIVE_49
118.1
B_CELL_NAIVE_50
116.6
B_CELL_NAIVE_51
116.1
B_CELL_NAIVE_52
115.8
B_CELL_NAIVE_53
115.8
B_CELL_NAIVE_54
115.7
B_CELL_NAIVE_55
115.6
B_CELL_NAIVE_56
115.5
B_CELL_NAIVE_57
115.3
B_CELL_NAIVE_58
114.8
B_CELL_NAIVE_59
114.7
B_CELL_NAIVE_60
114.5
B_CELL_NAIVE_61
113.9
B_CELL_NAIVE_62
112.5
B_CELL_NAIVE_63
111.6
B_CELL_NAIVE_64
111.5
B_CELL_NAIVE_65
111.3
B_CELL_NAIVE_66
110.7
B_CELL_NAIVE_67
109.0
B_CELL_NAIVE_68
108.8
B_CELL_NAIVE_69
108.2
B_CELL_NAIVE_70
107.6
B_CELL_NAIVE_71
107.0
B_CELL_NAIVE_72
106.9
B_CELL_NAIVE_73
106.4
B_CELL_NAIVE_74
104.0
B_CELL_NAIVE_75
103.9
B_CELL_NAIVE_76
103.8
B_CELL_NAIVE_77
103.5
B_CELL_NAIVE_78
102.4
B_CELL_NAIVE_79
101.9
B_CELL_NAIVE_80
101.8
B_CELL_NAIVE_81
100.7
B_CELL_NAIVE_82
100.5
B_CELL_NAIVE_83
100.4
B_CELL_NAIVE_84
99.9
B_CELL_NAIVE_85
97.8
B_CELL_NAIVE_86
95.2
B_CELL_NAIVE_87
94.1
B_CELL_NAIVE_88
91.0
B_CELL_NAIVE_89
83.4
B_CELL_NAIVE_90
82.7
B_CELL_NAIVE_91
81.9
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
