A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.5
nTPM
Monaco:
7.9
nTPM
Schmiedel:
18.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
HPA sample
nTPM
Memory B-cell nTPM: 0.1
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1017
0.2
P10809_1025
0.1
P10809_1044
0.0
P10809_1063
0.0
P10809_1092
0.0
P10809_1105
0.4
Naive B-cell nTPM: 0.5
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1011
0.7
P10809_1029
0.4
P10809_1048
0.0
P10809_1067
0.9
P10809_1091
0.3
P10809_1104
0.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1.2
Samples: 4
Max nTPM: 2.2
Min nTPM: 0.0
RHH5310_R3677
1.9
RHH5218_R3590
0.0
RHH5247_R3619
2.2
RHH5276_R3648
0.8
Naive B-cell nTPM: 7.9
Samples: 4
Max nTPM: 16.6
Min nTPM: 0.0
RHH5308_R3675
10.1
RHH5216_R3588
0.0
RHH5245_R3617
16.6
RHH5274_R3646
5.0
Non-switched memory B-cell nTPM: 4.2
Samples: 4
Max nTPM: 8.0
Min nTPM: 0.0
RHH5309_R3676
6.1
RHH5217_R3589
0.0
RHH5246_R3618
8.0
RHH5275_R3647
2.8
Plasmablast nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
0.0
RHH5249_R3621
0.0
RHH5278_R3650
0.0
Switched memory B-cell nTPM: 1.9
Samples: 4
Max nTPM: 3.3
Min nTPM: 0.0
RHH5311_R3678
2.5
RHH5219_R3591
0.0
RHH5248_R3620
3.3
RHH5277_R3649
1.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.3
Schmiedel sample id
TPM
Naive B-cell TPM: 18.3
Samples: 91
Max TPM: 34.9
Min TPM: 0.0
B_CELL_NAIVE_1
34.9
B_CELL_NAIVE_2
34.8
B_CELL_NAIVE_3
34.2
B_CELL_NAIVE_4
33.8
B_CELL_NAIVE_5
33.4
B_CELL_NAIVE_6
31.8
B_CELL_NAIVE_7
30.9
B_CELL_NAIVE_8
30.3
B_CELL_NAIVE_9
30.0
B_CELL_NAIVE_10
30.0
B_CELL_NAIVE_11
28.5
B_CELL_NAIVE_12
28.5
B_CELL_NAIVE_13
28.2
B_CELL_NAIVE_14
27.8
B_CELL_NAIVE_15
27.7
B_CELL_NAIVE_16
27.0
B_CELL_NAIVE_17
27.0
B_CELL_NAIVE_18
26.7
B_CELL_NAIVE_19
26.5
B_CELL_NAIVE_20
26.3
B_CELL_NAIVE_21
26.2
B_CELL_NAIVE_22
26.2
B_CELL_NAIVE_23
25.9
B_CELL_NAIVE_24
25.7
B_CELL_NAIVE_25
25.7
B_CELL_NAIVE_26
25.7
B_CELL_NAIVE_27
24.7
B_CELL_NAIVE_28
24.4
B_CELL_NAIVE_29
24.2
B_CELL_NAIVE_30
24.1
B_CELL_NAIVE_31
24.0
B_CELL_NAIVE_32
23.4
B_CELL_NAIVE_33
23.2
B_CELL_NAIVE_34
23.1
B_CELL_NAIVE_35
22.9
B_CELL_NAIVE_36
22.9
B_CELL_NAIVE_37
22.7
B_CELL_NAIVE_38
22.2
B_CELL_NAIVE_39
21.0
B_CELL_NAIVE_40
18.9
B_CELL_NAIVE_41
18.6
B_CELL_NAIVE_42
18.6
B_CELL_NAIVE_43
18.4
B_CELL_NAIVE_44
18.4
B_CELL_NAIVE_45
18.1
B_CELL_NAIVE_46
18.0
B_CELL_NAIVE_47
18.0
B_CELL_NAIVE_48
17.8
B_CELL_NAIVE_49
17.1
B_CELL_NAIVE_50
17.0
B_CELL_NAIVE_51
16.3
B_CELL_NAIVE_52
16.0
B_CELL_NAIVE_53
15.9
B_CELL_NAIVE_54
15.8
B_CELL_NAIVE_55
15.7
B_CELL_NAIVE_56
15.4
B_CELL_NAIVE_57
15.3
B_CELL_NAIVE_58
14.9
B_CELL_NAIVE_59
14.4
B_CELL_NAIVE_60
13.9
B_CELL_NAIVE_61
13.6
B_CELL_NAIVE_62
13.4
B_CELL_NAIVE_63
12.3
B_CELL_NAIVE_64
12.2
B_CELL_NAIVE_65
11.8
B_CELL_NAIVE_66
11.7
B_CELL_NAIVE_67
11.2
B_CELL_NAIVE_68
11.2
B_CELL_NAIVE_69
11.1
B_CELL_NAIVE_70
11.1
B_CELL_NAIVE_71
11.1
B_CELL_NAIVE_72
10.6
B_CELL_NAIVE_73
10.5
B_CELL_NAIVE_74
10.5
B_CELL_NAIVE_75
10.4
B_CELL_NAIVE_76
10.3
B_CELL_NAIVE_77
10.1
B_CELL_NAIVE_78
10.0
B_CELL_NAIVE_79
9.8
B_CELL_NAIVE_80
9.4
B_CELL_NAIVE_81
8.9
B_CELL_NAIVE_82
8.7
B_CELL_NAIVE_83
5.9
B_CELL_NAIVE_84
5.6
B_CELL_NAIVE_85
4.4
B_CELL_NAIVE_86
4.3
B_CELL_NAIVE_87
0.0
B_CELL_NAIVE_88
0.0
B_CELL_NAIVE_89
0.0
B_CELL_NAIVE_90
0.0
B_CELL_NAIVE_91
0.0
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The Human Protein Atlas project is funded
