MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:80.3 nTPM
HPA Brain:149.7 nTPM
GTEx:80.3 nTPM
FANTOM5:209.6 Scaled Tags Per Million
Pig:263.9 nTPM
Mouse:41.2 nTPM
Allen mouse:5.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 149.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 142.6
2586 Male, age 75, left hemisphere 161.0
1870 Female, age 42, unknown 159.8
2019 Male, age 18, unknown 151.0
2411 Female, age 72, unknown 147.9
1833 Male, age 53, unknown 142.6
1830 Male, age 51, unknown 141.4
2666 Male, age 74, left hemisphere 138.6
1827 Male, age 72, unknown 137.4
2828 Female, age 72, unknown 131.1
2219 Male, age 76, both hemispheres 115.2
Dorsal raphe nucleus
nTPM: 131.8
2016 Female, age 72, unknown 150.5
2750 Male, age 76, both hemispheres 137.3
1828 Male, age 53, unknown 133.2
2298 Female, age 72, unknown 122.9
2047 Male, age 72, unknown 115.3
Inferior colliculus
nTPM: 134.6
2097 Female, age 72, unknown 141.4
2849 Male, age 72, unknown 134.4
1848 Female, age 42, unknown 133.1
1890 Male, age 53, unknown 129.6
Median raphe nucleus
nTPM: 122.5
2220 Male, age 76, midline 122.5
Periaquaductal grey, anterior
nTPM: 141.6
2502 Female, age 75, unknown 158.1
1947 Male, age 18, unknown 142.2
1795 Male, age 51, unknown 124.6
Periaquaductal grey, dorsal
nTPM: 143.3
2850 Male, age 76, both hemispheres 146.4
1840 Male, age 53, unknown 142.9
2464 Female, age 72, unknown 142.3
1831 Male, age 72, unknown 141.5
Periaquaductal grey, lateral
nTPM: 128.4
2053 Male, age 18, unknown 137.9
2140 Male, age 76, both hemispheres 133.5
2272 Male, age 74, both hemispheres 113.8
Pretectal area
nTPM: 142.2
1815 Male, age 53, unknown 155.9
1816 Male, age 51, unknown 151.5
1817 Female, age 42, unknown 149.9
2407 Male, age 75, both hemispheres 148.8
2316 Male, age 76, right hemisphere 140.0
2273 Male, age 74, both hemispheres 139.6
1944 Female, age 72, unknown 139.3
2007 Male, age 72, unknown 139.0
2667 Female, age 75, unknown 136.0
2224 Female, age 72, unknown 132.6
2825 Male, age 18, unknown 131.6
Red nucleus
nTPM: 149.7
1821 Female, age 72, unknown 166.3
2503 Female, age 72, unknown 163.9
1904 Male, age 53, unknown 156.4
1954 Female, age 42, unknown 156.0
1865 Male, age 51, unknown 155.5
2785 Male, age 18, unknown 150.6
2227 Male, age 72, unknown 147.8
2823 Male, age 76, right hemisphere 145.2
2588 Male, age 74, left hemisphere 142.1
2769 Male, age 72, unknown 141.2
2584 Male, age 75, left hemisphere 136.9
2725 Female, age 75, unknown 135.0
Substantia nigra
nTPM: 135.7
2241 Male, age 72, unknown 151.8
2409 Female, age 72, unknown 146.2
1851 Male, age 51, unknown 137.2
2590 Female, age 75, unknown 136.6
1889 Female, age 72, unknown 135.8
1941 Male, age 53, unknown 135.7
2583 Male, age 75, right hemisphere 135.5
2665 Male, age 74, both hemispheres 131.5
2699 Male, age 18, unknown 131.0
1916 Female, age 42, unknown 116.1
Superior colliculus
nTPM: 148.5
1995 Male, age 72, unknown 171.8
1913 Female, age 42, unknown 169.0
2664 Male, age 75, both hemispheres 168.6
2668 Female, age 75, unknown 150.8
1839 Male, age 51, unknown 147.7
2587 Male, age 74, left hemisphere 143.2
2261 Male, age 18, unknown 141.5
2087 Female, age 72, unknown 133.4
1895 Male, age 76, right hemisphere 131.4
1796 Male, age 53, unknown 127.4
Ventral tegmental area
nTPM: 133.5
2223 Female, age 72, unknown 146.7
2410 Female, age 72, unknown 137.9
2021 Male, age 53, unknown 136.9
1942 Male, age 51, unknown 134.5
1915 Female, age 42, unknown 124.7
2218 Male, age 76, both hemispheres 120.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 80.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.3
Samples: 183

Max nTPM: 166.0
Min nTPM: 34.8
Std nTPM: 21.5
Median nTPM: 76.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 166.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 158.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 152.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 133.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 130.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 125.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 121.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 119.3
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 117.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 116.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 116.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 209.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 209.6
FF:10158-103A5 76 years, female 209.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 263.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 235.5
Samples: 4

Max nTPM: 262.4
Min nTPM: 221.5
Sample A Female 262.4
Sample B Female 221.5
Sample C Male 226.7
Sample D Male 231.4
Midbrain
nTPM: 263.9
Samples: 4

Max nTPM: 371.0
Min nTPM: 214.6
Sample A Female 371.0
Sample B Female 232.9
Sample C Male 237.2
Sample D Male 214.6
Periaqueductal gray
nTPM: 228.1
Samples: 3

Max nTPM: 231.0
Min nTPM: 223.1
Sample B Female 223.1
Sample C Male 231.0
Sample D Male 230.1
Superior colliculi
nTPM: 239.1
Samples: 4

Max nTPM: 273.9
Min nTPM: 199.8
Sample A Female 273.9
Sample B Female 199.8
Sample C Male 237.6
Sample D Male 245.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 41.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.2
Samples: 4

Max nTPM: 42.6
Min nTPM: 39.2
Sample A Male 39.2
Sample B Male 42.6
Sample C Female 42.1
Sample D Female 40.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
68162273 Antisense, RP_041122_02_G07, Mouse strain C57BL/6J (56 days, male) 5.4

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