A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.7
nTPM
Monaco:
10.7
nTPM
Schmiedel:
80.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.7
HPA sample
nTPM
Classical monocyte nTPM: 2.7
Samples: 6
Max nTPM: 4.0
Min nTPM: 1.0
P10809_1003
1.0
P10809_1020
2.0
P10809_1039
2.9
P10809_1058
4.0
P10809_1080
3.2
P10809_1107
3.2
Intermediate monocyte nTPM: 1.8
Samples: 6
Max nTPM: 4.5
Min nTPM: 0.6
P10809_1004
1.2
P10809_1023
0.8
P10809_1042
1.3
P10809_1061
4.5
P10809_1081
2.3
P10809_1108
0.6
Non-classical monocyte nTPM: 1.2
Samples: 5
Max nTPM: 2.3
Min nTPM: 0.0
P10809_1005
0.7
P10809_1053
0.9
P10809_1072
0.0
P10809_1082
2.3
P10809_1109
1.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.7
Monaco sample
nTPM
Classical monocyte nTPM: 10.7
Samples: 4
Max nTPM: 25.3
Min nTPM: 2.6
RHH5313_R3680
2.6
RHH5221_R3593
25.3
RHH5250_R3622
6.5
RHH5279_R3651
8.3
Intermediate monocyte nTPM: 8.5
Samples: 4
Max nTPM: 17.5
Min nTPM: 2.6
RHH5314_R3681
8.3
RHH5222_R3594
17.5
RHH5251_R3623
5.6
RHH5280_R3652
2.6
Non-classical monocyte nTPM: 5.0
Samples: 4
Max nTPM: 8.8
Min nTPM: 1.9
RHH5315_R3682
5.7
RHH5223_R3595
1.9
RHH5252_R3624
8.8
RHH5281_R3653
3.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.0
Schmiedel sample id
TPM
Classical monocyte TPM: 80.0
Samples: 91
Max TPM: 129.5
Min TPM: 36.7
MONOCYTES_1
129.5
MONOCYTES_2
128.9
MONOCYTES_3
128.8
MONOCYTES_4
119.8
MONOCYTES_5
117.7
MONOCYTES_6
117.2
MONOCYTES_7
116.5
MONOCYTES_8
115.4
MONOCYTES_9
114.6
MONOCYTES_10
114.3
MONOCYTES_11
114.2
MONOCYTES_12
113.8
MONOCYTES_13
107.0
MONOCYTES_14
104.1
MONOCYTES_15
104.1
MONOCYTES_16
103.7
MONOCYTES_17
101.9
MONOCYTES_18
101.1
MONOCYTES_19
98.7
MONOCYTES_20
97.9
MONOCYTES_21
97.7
MONOCYTES_22
96.9
MONOCYTES_23
96.8
MONOCYTES_24
96.5
MONOCYTES_25
96.2
MONOCYTES_26
95.6
MONOCYTES_27
94.6
MONOCYTES_28
94.6
MONOCYTES_29
92.1
MONOCYTES_30
92.1
MONOCYTES_31
91.5
MONOCYTES_32
91.4
MONOCYTES_33
87.1
MONOCYTES_34
86.1
MONOCYTES_35
85.4
MONOCYTES_36
85.3
MONOCYTES_37
85.2
MONOCYTES_38
84.0
MONOCYTES_39
83.9
MONOCYTES_40
83.6
MONOCYTES_41
82.6
MONOCYTES_42
81.9
MONOCYTES_43
81.0
MONOCYTES_44
80.4
MONOCYTES_45
78.7
MONOCYTES_46
78.1
MONOCYTES_47
77.7
MONOCYTES_48
77.2
MONOCYTES_49
76.0
MONOCYTES_50
74.7
MONOCYTES_51
74.5
MONOCYTES_52
74.2
MONOCYTES_53
74.2
MONOCYTES_54
72.7
MONOCYTES_55
72.0
MONOCYTES_56
69.6
MONOCYTES_57
67.4
MONOCYTES_58
67.4
MONOCYTES_59
66.9
MONOCYTES_60
66.4
MONOCYTES_61
65.9
MONOCYTES_62
65.7
MONOCYTES_63
65.0
MONOCYTES_64
65.0
MONOCYTES_65
64.9
MONOCYTES_66
63.7
MONOCYTES_67
63.1
MONOCYTES_68
62.3
MONOCYTES_69
61.3
MONOCYTES_70
60.6
MONOCYTES_71
59.9
MONOCYTES_72
59.7
MONOCYTES_73
59.3
MONOCYTES_74
58.4
MONOCYTES_75
57.1
MONOCYTES_76
57.1
MONOCYTES_77
56.3
MONOCYTES_78
55.2
MONOCYTES_79
54.6
MONOCYTES_80
54.1
MONOCYTES_81
54.0
MONOCYTES_82
54.0
MONOCYTES_83
53.3
MONOCYTES_84
48.3
MONOCYTES_85
46.6
MONOCYTES_86
45.8
MONOCYTES_87
45.1
MONOCYTES_88
44.8
MONOCYTES_89
44.0
MONOCYTES_90
38.4
MONOCYTES_91
36.7
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Non-classical monocyte TPM: 19.5
Samples: 90
Max TPM: 49.6
Min TPM: 5.1
M2_1
49.6
M2_2
38.7
M2_3
37.5
M2_4
37.1
M2_5
36.9
M2_6
36.8
M2_7
36.5
M2_8
33.0
M2_9
31.6
M2_10
30.6
M2_11
29.7
M2_12
29.2
M2_13
28.8
M2_14
27.6
M2_15
27.4
M2_16
26.1
M2_17
26.1
M2_18
25.8
M2_19
25.1
M2_20
24.9
M2_21
24.9
M2_22
24.5
M2_23
23.6
M2_24
23.4
M2_25
23.2
M2_26
23.2
M2_27
22.4
M2_28
22.1
M2_29
21.7
M2_30
21.5
M2_31
21.1
M2_32
20.9
M2_33
20.8
M2_34
20.7
M2_35
20.6
M2_36
20.5
M2_37
20.5
M2_38
20.2
M2_39
19.7
M2_40
19.4
M2_41
19.3
M2_42
18.8
M2_43
18.6
M2_44
18.5
M2_45
18.2
M2_46
18.0
M2_47
17.9
M2_48
17.8
M2_49
17.6
M2_50
16.8
M2_51
16.6
M2_52
16.3
M2_53
16.2
M2_54
16.2
M2_55
16.2
M2_56
15.9
M2_57
15.8
M2_58
15.7
M2_59
15.7
M2_60
14.9
M2_61
14.9
M2_62
14.8
M2_63
14.7
M2_64
14.7
M2_65
14.7
M2_66
14.6
M2_67
14.6
M2_68
14.5
M2_69
14.3
M2_70
14.0
M2_71
13.8
M2_72
13.7
M2_73
13.4
M2_74
13.0
M2_75
12.3
M2_76
11.1
M2_77
11.0
M2_78
10.5
M2_79
10.3
M2_80
10.2
M2_81
10.1
M2_82
9.9
M2_83
9.3
M2_84
8.9
M2_85
8.3
M2_86
7.3
M2_87
6.9
M2_88
6.3
M2_89
6.2
M2_90
5.1
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