A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.3
nTPM
Monaco:
219.0
nTPM
Schmiedel:
184.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.3
HPA sample
nTPM
NK-cell nTPM: 16.3
Samples: 6
Max nTPM: 32.8
Min nTPM: 6.5
P10809_1013
18.5
P10809_1033
6.5
P10809_1052
12.4
P10809_1071
15.1
P10809_1093
32.8
P10809_1103
12.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
219.0
Monaco sample
nTPM
NK-cell nTPM: 219.0
Samples: 4
Max nTPM: 257.9
Min nTPM: 179.0
RHH5316_R3683
225.1
RHH5224_R3596
179.0
RHH5253_R3625
257.9
RHH5282_R3654
213.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
184.6
Schmiedel sample id
TPM
NK-cell TPM: 184.6
Samples: 90
Max TPM: 307.9
Min TPM: 114.3
NK_1
307.9
NK_2
303.2
NK_3
252.0
NK_4
250.1
NK_5
243.9
NK_6
239.1
NK_7
233.0
NK_8
232.4
NK_9
226.8
NK_10
224.4
NK_11
223.5
NK_12
222.1
NK_13
221.3
NK_14
221.2
NK_15
217.6
NK_16
217.2
NK_17
216.4
NK_18
216.3
NK_19
213.5
NK_20
212.5
NK_21
208.2
NK_22
207.3
NK_23
206.8
NK_24
205.4
NK_25
205.3
NK_26
199.4
NK_27
197.3
NK_28
196.0
NK_29
195.5
NK_30
195.0
NK_31
192.7
NK_32
191.3
NK_33
191.0
NK_34
187.9
NK_35
186.2
NK_36
185.8
NK_37
185.3
NK_38
184.4
NK_39
183.1
NK_40
182.0
NK_41
180.9
NK_42
180.7
NK_43
179.5
NK_44
179.3
NK_45
177.6
NK_46
177.4
NK_47
176.9
NK_48
176.7
NK_49
176.5
NK_50
176.3
NK_51
174.1
NK_52
173.6
NK_53
172.6
NK_54
171.5
NK_55
171.3
NK_56
170.6
NK_57
170.6
NK_58
169.2
NK_59
169.1
NK_60
168.2
NK_61
167.4
NK_62
167.3
NK_63
165.1
NK_64
162.1
NK_65
161.7
NK_66
160.7
NK_67
159.3
NK_68
159.1
NK_69
159.0
NK_70
158.4
NK_71
157.8
NK_72
157.6
NK_73
155.7
NK_74
155.2
NK_75
154.0
NK_76
153.3
NK_77
152.9
NK_78
152.8
NK_79
151.8
NK_80
151.1
NK_81
150.4
NK_82
148.7
NK_83
145.6
NK_84
145.5
NK_85
143.0
NK_86
139.8
NK_87
137.8
NK_88
134.9
NK_89
119.4
NK_90
114.3
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