A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
86.3
nTPM
Monaco:
125.7
nTPM
Schmiedel:
29.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.3
HPA sample
nTPM
Classical monocyte nTPM: 86.3
Samples: 6
Max nTPM: 107.7
Min nTPM: 74.9
P10809_1003
74.9
P10809_1020
107.7
P10809_1039
84.0
P10809_1058
77.7
P10809_1080
80.7
P10809_1107
92.6
Intermediate monocyte nTPM: 56.7
Samples: 6
Max nTPM: 76.0
Min nTPM: 33.6
P10809_1004
44.4
P10809_1023
76.0
P10809_1042
61.2
P10809_1061
33.6
P10809_1081
53.8
P10809_1108
71.3
Non-classical monocyte nTPM: 31.5
Samples: 5
Max nTPM: 38.8
Min nTPM: 22.1
P10809_1005
38.8
P10809_1053
34.9
P10809_1072
22.1
P10809_1082
23.8
P10809_1109
37.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.7
Monaco sample
nTPM
Classical monocyte nTPM: 125.7
Samples: 4
Max nTPM: 141.7
Min nTPM: 114.2
RHH5313_R3680
141.7
RHH5221_R3593
130.0
RHH5250_R3622
116.8
RHH5279_R3651
114.2
Intermediate monocyte nTPM: 74.8
Samples: 4
Max nTPM: 89.1
Min nTPM: 55.7
RHH5314_R3681
89.1
RHH5222_R3594
55.7
RHH5251_R3623
85.9
RHH5280_R3652
68.5
Non-classical monocyte nTPM: 72.0
Samples: 4
Max nTPM: 87.7
Min nTPM: 55.4
RHH5315_R3682
81.3
RHH5223_R3595
55.4
RHH5252_R3624
87.7
RHH5281_R3653
63.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.6
Schmiedel sample id
TPM
Classical monocyte TPM: 29.6
Samples: 91
Max TPM: 46.0
Min TPM: 13.7
MONOCYTES_1
46.0
MONOCYTES_2
44.9
MONOCYTES_3
43.3
MONOCYTES_4
42.5
MONOCYTES_5
41.3
MONOCYTES_6
39.8
MONOCYTES_7
39.3
MONOCYTES_8
38.6
MONOCYTES_9
38.5
MONOCYTES_10
38.4
MONOCYTES_11
38.3
MONOCYTES_12
38.2
MONOCYTES_13
38.1
MONOCYTES_14
37.7
MONOCYTES_15
37.4
MONOCYTES_16
36.5
MONOCYTES_17
36.3
MONOCYTES_18
36.1
MONOCYTES_19
36.0
MONOCYTES_20
35.7
MONOCYTES_21
35.6
MONOCYTES_22
35.0
MONOCYTES_23
34.8
MONOCYTES_24
34.4
MONOCYTES_25
34.3
MONOCYTES_26
34.0
MONOCYTES_27
33.8
MONOCYTES_28
33.5
MONOCYTES_29
33.0
MONOCYTES_30
32.6
MONOCYTES_31
32.6
MONOCYTES_32
32.5
MONOCYTES_33
32.4
MONOCYTES_34
32.2
MONOCYTES_35
32.2
MONOCYTES_36
32.0
MONOCYTES_37
31.5
MONOCYTES_38
31.4
MONOCYTES_39
31.1
MONOCYTES_40
31.0
MONOCYTES_41
30.9
MONOCYTES_42
30.8
MONOCYTES_43
30.2
MONOCYTES_44
30.1
MONOCYTES_45
29.7
MONOCYTES_46
29.7
MONOCYTES_47
29.6
MONOCYTES_48
29.4
MONOCYTES_49
29.2
MONOCYTES_50
29.2
MONOCYTES_51
29.2
MONOCYTES_52
29.1
MONOCYTES_53
28.2
MONOCYTES_54
27.9
MONOCYTES_55
27.7
MONOCYTES_56
27.5
MONOCYTES_57
27.3
MONOCYTES_58
27.2
MONOCYTES_59
27.2
MONOCYTES_60
26.3
MONOCYTES_61
26.2
MONOCYTES_62
26.1
MONOCYTES_63
26.1
MONOCYTES_64
26.0
MONOCYTES_65
25.9
MONOCYTES_66
25.6
MONOCYTES_67
25.4
MONOCYTES_68
25.3
MONOCYTES_69
25.3
MONOCYTES_70
24.8
MONOCYTES_71
24.3
MONOCYTES_72
24.1
MONOCYTES_73
23.6
MONOCYTES_74
23.4
MONOCYTES_75
23.3
MONOCYTES_76
23.3
MONOCYTES_77
22.6
MONOCYTES_78
21.5
MONOCYTES_79
21.5
MONOCYTES_80
21.1
MONOCYTES_81
21.0
MONOCYTES_82
19.4
MONOCYTES_83
18.9
MONOCYTES_84
18.0
MONOCYTES_85
17.6
MONOCYTES_86
17.4
MONOCYTES_87
17.0
MONOCYTES_88
16.9
MONOCYTES_89
16.1
MONOCYTES_90
15.3
MONOCYTES_91
13.7
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Non-classical monocyte TPM: 14.8
Samples: 90
Max TPM: 26.4
Min TPM: 6.1
M2_1
26.4
M2_2
24.7
M2_3
23.4
M2_4
22.9
M2_5
22.5
M2_6
21.2
M2_7
21.1
M2_8
20.8
M2_9
20.2
M2_10
19.6
M2_11
19.3
M2_12
19.2
M2_13
19.2
M2_14
19.1
M2_15
19.1
M2_16
19.0
M2_17
18.7
M2_18
18.5
M2_19
18.4
M2_20
17.7
M2_21
17.3
M2_22
17.2
M2_23
16.9
M2_24
16.8
M2_25
16.8
M2_26
16.7
M2_27
16.6
M2_28
16.5
M2_29
16.5
M2_30
16.3
M2_31
16.1
M2_32
16.1
M2_33
16.1
M2_34
16.1
M2_35
15.9
M2_36
15.7
M2_37
15.5
M2_38
15.5
M2_39
15.3
M2_40
15.2
M2_41
15.2
M2_42
15.1
M2_43
15.0
M2_44
14.9
M2_45
14.9
M2_46
14.8
M2_47
14.7
M2_48
14.6
M2_49
14.6
M2_50
14.4
M2_51
14.3
M2_52
14.2
M2_53
14.1
M2_54
13.8
M2_55
13.4
M2_56
13.4
M2_57
13.3
M2_58
13.2
M2_59
13.2
M2_60
13.1
M2_61
12.9
M2_62
12.9
M2_63
12.7
M2_64
12.6
M2_65
12.6
M2_66
12.4
M2_67
12.1
M2_68
11.9
M2_69
11.7
M2_70
11.7
M2_71
11.5
M2_72
11.4
M2_73
11.4
M2_74
10.9
M2_75
10.8
M2_76
10.6
M2_77
10.3
M2_78
10.0
M2_79
10.0
M2_80
9.7
M2_81
9.6
M2_82
8.5
M2_83
8.5
M2_84
8.3
M2_85
8.3
M2_86
8.1
M2_87
7.7
M2_88
7.4
M2_89
6.3
M2_90
6.1
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