A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
141.6
nTPM
Monaco:
75.4
nTPM
Schmiedel:
31.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
141.6
HPA sample
nTPM
Classical monocyte nTPM: 91.1
Samples: 6
Max nTPM: 132.9
Min nTPM: 63.4
P10809_1003
63.4
P10809_1020
103.4
P10809_1039
132.9
P10809_1058
76.1
P10809_1080
80.0
P10809_1107
90.8
Intermediate monocyte nTPM: 140.9
Samples: 6
Max nTPM: 201.8
Min nTPM: 105.9
P10809_1004
105.9
P10809_1023
201.8
P10809_1042
143.1
P10809_1061
155.7
P10809_1081
107.5
P10809_1108
131.2
Non-classical monocyte nTPM: 141.6
Samples: 5
Max nTPM: 187.7
Min nTPM: 90.8
P10809_1005
123.5
P10809_1053
185.8
P10809_1072
90.8
P10809_1082
120.2
P10809_1109
187.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.4
Monaco sample
nTPM
Classical monocyte nTPM: 62.1
Samples: 4
Max nTPM: 84.7
Min nTPM: 44.7
RHH5313_R3680
44.7
RHH5221_R3593
51.6
RHH5250_R3622
84.7
RHH5279_R3651
67.4
Intermediate monocyte nTPM: 75.4
Samples: 4
Max nTPM: 87.0
Min nTPM: 65.9
RHH5314_R3681
87.0
RHH5222_R3594
65.9
RHH5251_R3623
67.2
RHH5280_R3652
81.4
Non-classical monocyte nTPM: 63.4
Samples: 4
Max nTPM: 77.4
Min nTPM: 51.3
RHH5315_R3682
69.9
RHH5223_R3595
51.3
RHH5252_R3624
54.8
RHH5281_R3653
77.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.5
Schmiedel sample id
TPM
Classical monocyte TPM: 25.0
Samples: 91
Max TPM: 33.5
Min TPM: 19.6
MONOCYTES_1
33.5
MONOCYTES_2
30.5
MONOCYTES_3
29.9
MONOCYTES_4
29.7
MONOCYTES_5
29.6
MONOCYTES_6
29.6
MONOCYTES_7
29.5
MONOCYTES_8
29.0
MONOCYTES_9
28.9
MONOCYTES_10
28.9
MONOCYTES_11
28.8
MONOCYTES_12
28.7
MONOCYTES_13
28.5
MONOCYTES_14
28.5
MONOCYTES_15
28.0
MONOCYTES_16
27.9
MONOCYTES_17
27.7
MONOCYTES_18
27.6
MONOCYTES_19
27.4
MONOCYTES_20
27.4
MONOCYTES_21
27.4
MONOCYTES_22
27.2
MONOCYTES_23
27.2
MONOCYTES_24
27.2
MONOCYTES_25
27.0
MONOCYTES_26
26.9
MONOCYTES_27
26.8
MONOCYTES_28
26.6
MONOCYTES_29
26.3
MONOCYTES_30
26.2
MONOCYTES_31
26.1
MONOCYTES_32
26.0
MONOCYTES_33
25.7
MONOCYTES_34
25.7
MONOCYTES_35
25.7
MONOCYTES_36
25.6
MONOCYTES_37
25.6
MONOCYTES_38
25.5
MONOCYTES_39
25.3
MONOCYTES_40
25.0
MONOCYTES_41
24.9
MONOCYTES_42
24.8
MONOCYTES_43
24.8
MONOCYTES_44
24.8
MONOCYTES_45
24.6
MONOCYTES_46
24.5
MONOCYTES_47
24.3
MONOCYTES_48
24.2
MONOCYTES_49
24.2
MONOCYTES_50
24.2
MONOCYTES_51
24.0
MONOCYTES_52
23.9
MONOCYTES_53
23.9
MONOCYTES_54
23.7
MONOCYTES_55
23.7
MONOCYTES_56
23.7
MONOCYTES_57
23.7
MONOCYTES_58
23.6
MONOCYTES_59
23.5
MONOCYTES_60
23.4
MONOCYTES_61
23.4
MONOCYTES_62
23.2
MONOCYTES_63
23.2
MONOCYTES_64
23.2
MONOCYTES_65
23.2
MONOCYTES_66
23.0
MONOCYTES_67
23.0
MONOCYTES_68
22.8
MONOCYTES_69
22.4
MONOCYTES_70
22.4
MONOCYTES_71
22.3
MONOCYTES_72
22.3
MONOCYTES_73
22.3
MONOCYTES_74
22.2
MONOCYTES_75
22.2
MONOCYTES_76
22.1
MONOCYTES_77
22.1
MONOCYTES_78
22.0
MONOCYTES_79
21.9
MONOCYTES_80
21.8
MONOCYTES_81
21.8
MONOCYTES_82
21.8
MONOCYTES_83
21.7
MONOCYTES_84
21.6
MONOCYTES_85
21.6
MONOCYTES_86
21.3
MONOCYTES_87
21.2
MONOCYTES_88
21.1
MONOCYTES_89
20.6
MONOCYTES_90
20.4
MONOCYTES_91
19.6
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Non-classical monocyte TPM: 31.5
Samples: 90
Max TPM: 41.5
Min TPM: 24.4
M2_1
41.5
M2_2
39.7
M2_3
39.3
M2_4
39.2
M2_5
37.5
M2_6
37.4
M2_7
36.4
M2_8
36.3
M2_9
35.6
M2_10
35.5
M2_11
35.3
M2_12
35.1
M2_13
35.0
M2_14
34.8
M2_15
34.5
M2_16
33.9
M2_17
33.8
M2_18
33.7
M2_19
33.6
M2_20
33.6
M2_21
33.6
M2_22
33.6
M2_23
33.5
M2_24
33.3
M2_25
33.2
M2_26
33.1
M2_27
33.0
M2_28
32.8
M2_29
32.7
M2_30
32.7
M2_31
32.6
M2_32
32.6
M2_33
32.4
M2_34
32.3
M2_35
32.1
M2_36
32.1
M2_37
32.1
M2_38
32.0
M2_39
32.0
M2_40
31.7
M2_41
31.7
M2_42
31.6
M2_43
31.6
M2_44
31.4
M2_45
31.4
M2_46
31.3
M2_47
31.2
M2_48
31.2
M2_49
31.2
M2_50
31.1
M2_51
31.0
M2_52
30.9
M2_53
30.9
M2_54
30.8
M2_55
30.8
M2_56
30.7
M2_57
30.4
M2_58
30.3
M2_59
30.2
M2_60
30.2
M2_61
30.1
M2_62
29.9
M2_63
29.9
M2_64
29.9
M2_65
29.8
M2_66
29.5
M2_67
29.2
M2_68
29.1
M2_69
28.8
M2_70
28.7
M2_71
28.7
M2_72
28.6
M2_73
28.5
M2_74
28.4
M2_75
28.2
M2_76
28.0
M2_77
27.9
M2_78
27.6
M2_79
27.6
M2_80
27.4
M2_81
27.2
M2_82
27.1
M2_83
27.0
M2_84
26.9
M2_85
26.7
M2_86
26.4
M2_87
26.3
M2_88
25.7
M2_89
25.2
M2_90
24.4
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