A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.3
nTPM
Monaco:
5.1
nTPM
Schmiedel:
16.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.3
HPA sample
nTPM
Classical monocyte nTPM: 0.3
Samples: 6
Max nTPM: 0.5
Min nTPM: 0.0
P10809_1003
0.2
P10809_1020
0.0
P10809_1039
0.4
P10809_1058
0.5
P10809_1080
0.2
P10809_1107
0.4
Intermediate monocyte nTPM: 0.3
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.0
P10809_1004
0.2
P10809_1023
0.0
P10809_1042
1.1
P10809_1061
0.0
P10809_1081
0.4
P10809_1108
0.0
Non-classical monocyte nTPM: 0.2
Samples: 5
Max nTPM: 0.5
Min nTPM: 0.0
P10809_1005
0.2
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.5
P10809_1109
0.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.1
Monaco sample
nTPM
Classical monocyte nTPM: 1.6
Samples: 4
Max nTPM: 3.4
Min nTPM: 0.0
RHH5313_R3680
0.4
RHH5221_R3593
3.4
RHH5250_R3622
0.0
RHH5279_R3651
2.5
Intermediate monocyte nTPM: 5.1
Samples: 4
Max nTPM: 9.5
Min nTPM: 2.8
RHH5314_R3681
5.2
RHH5222_R3594
9.5
RHH5251_R3623
2.8
RHH5280_R3652
2.9
Non-classical monocyte nTPM: 5.1
Samples: 4
Max nTPM: 10.0
Min nTPM: 0.5
RHH5315_R3682
10.0
RHH5223_R3595
6.6
RHH5252_R3624
3.1
RHH5281_R3653
0.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.3
Schmiedel sample id
TPM
Classical monocyte TPM: 13.1
Samples: 91
Max TPM: 25.0
Min TPM: 6.2
MONOCYTES_1
25.0
MONOCYTES_2
24.7
MONOCYTES_3
22.1
MONOCYTES_4
20.7
MONOCYTES_5
19.8
MONOCYTES_6
18.8
MONOCYTES_7
18.6
MONOCYTES_8
18.6
MONOCYTES_9
18.2
MONOCYTES_10
17.9
MONOCYTES_11
17.9
MONOCYTES_12
17.5
MONOCYTES_13
17.4
MONOCYTES_14
17.4
MONOCYTES_15
17.2
MONOCYTES_16
17.1
MONOCYTES_17
16.9
MONOCYTES_18
16.8
MONOCYTES_19
16.6
MONOCYTES_20
16.4
MONOCYTES_21
16.3
MONOCYTES_22
16.3
MONOCYTES_23
16.1
MONOCYTES_24
16.0
MONOCYTES_25
15.8
MONOCYTES_26
15.8
MONOCYTES_27
15.6
MONOCYTES_28
15.5
MONOCYTES_29
15.3
MONOCYTES_30
15.3
MONOCYTES_31
15.2
MONOCYTES_32
15.1
MONOCYTES_33
14.8
MONOCYTES_34
14.8
MONOCYTES_35
14.3
MONOCYTES_36
14.3
MONOCYTES_37
13.9
MONOCYTES_38
13.7
MONOCYTES_39
13.6
MONOCYTES_40
13.3
MONOCYTES_41
13.1
MONOCYTES_42
12.9
MONOCYTES_43
12.5
MONOCYTES_44
12.5
MONOCYTES_45
12.5
MONOCYTES_46
12.4
MONOCYTES_47
12.3
MONOCYTES_48
12.3
MONOCYTES_49
12.2
MONOCYTES_50
12.0
MONOCYTES_51
11.8
MONOCYTES_52
11.7
MONOCYTES_53
11.7
MONOCYTES_54
11.5
MONOCYTES_55
11.5
MONOCYTES_56
11.5
MONOCYTES_57
11.4
MONOCYTES_58
11.3
MONOCYTES_59
11.2
MONOCYTES_60
11.0
MONOCYTES_61
10.8
MONOCYTES_62
10.8
MONOCYTES_63
10.7
MONOCYTES_64
10.4
MONOCYTES_65
10.2
MONOCYTES_66
10.2
MONOCYTES_67
10.1
MONOCYTES_68
10.0
MONOCYTES_69
10.0
MONOCYTES_70
9.9
MONOCYTES_71
9.9
MONOCYTES_72
9.8
MONOCYTES_73
9.7
MONOCYTES_74
9.5
MONOCYTES_75
9.1
MONOCYTES_76
9.1
MONOCYTES_77
8.8
MONOCYTES_78
8.7
MONOCYTES_79
8.6
MONOCYTES_80
8.3
MONOCYTES_81
8.1
MONOCYTES_82
8.0
MONOCYTES_83
8.0
MONOCYTES_84
7.2
MONOCYTES_85
7.1
MONOCYTES_86
7.0
MONOCYTES_87
6.7
MONOCYTES_88
6.7
MONOCYTES_89
6.5
MONOCYTES_90
6.2
MONOCYTES_91
6.2
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Non-classical monocyte TPM: 16.3
Samples: 90
Max TPM: 33.9
Min TPM: 5.4
M2_1
33.9
M2_2
30.3
M2_3
28.1
M2_4
27.6
M2_5
26.4
M2_6
26.3
M2_7
26.0
M2_8
25.9
M2_9
25.8
M2_10
25.8
M2_11
25.1
M2_12
23.8
M2_13
23.8
M2_14
22.8
M2_15
22.4
M2_16
21.8
M2_17
21.6
M2_18
21.4
M2_19
21.0
M2_20
20.8
M2_21
20.2
M2_22
20.1
M2_23
19.7
M2_24
19.6
M2_25
19.4
M2_26
19.4
M2_27
19.3
M2_28
19.0
M2_29
18.6
M2_30
18.6
M2_31
18.2
M2_32
18.1
M2_33
18.0
M2_34
17.9
M2_35
17.6
M2_36
17.4
M2_37
17.3
M2_38
16.7
M2_39
16.7
M2_40
16.5
M2_41
16.4
M2_42
16.3
M2_43
16.1
M2_44
16.0
M2_45
15.5
M2_46
15.4
M2_47
15.2
M2_48
15.2
M2_49
15.1
M2_50
15.1
M2_51
14.8
M2_52
14.7
M2_53
14.4
M2_54
14.4
M2_55
14.2
M2_56
13.8
M2_57
13.6
M2_58
13.6
M2_59
13.3
M2_60
13.2
M2_61
13.1
M2_62
12.9
M2_63
12.5
M2_64
12.4
M2_65
12.4
M2_66
12.4
M2_67
12.1
M2_68
11.6
M2_69
11.6
M2_70
11.5
M2_71
11.0
M2_72
10.6
M2_73
10.4
M2_74
10.4
M2_75
10.3
M2_76
10.0
M2_77
9.9
M2_78
9.9
M2_79
9.6
M2_80
9.1
M2_81
9.1
M2_82
8.9
M2_83
8.5
M2_84
8.2
M2_85
7.7
M2_86
7.7
M2_87
6.3
M2_88
6.0
M2_89
6.0
M2_90
5.4
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