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SLC44A1
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  • SLC44A1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:229.5 nTPM
HPA Brain:259.5 nTPM
GTEx:229.5 nTPM
FANTOM5:457.7 Scaled Tags Per Million
Pig:198.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 203.2
1981 Female, age 72, midline 250.6
2048 Male, age 55, midline 222.8
2816 Male, age 47, midline 205.4
2194 Female, age 79, both hemispheres 183.1
2565 Male, age 75, midline 154.0
Cervical spinal cord, dorsal horn
nTPM: 259.5
2296 Male, age 66, both hemispheres 456.5
2173 Female, age 72, unknown 354.3
2069 Male, age 47, both hemispheres 269.1
1877 Male, age 55, unknown 213.5
2297 Male, age 75, both hemispheres 146.9
2721 Male, age 90, both hemispheres 116.7
Cervical spinal cord, ventral horn
nTPM: 230.3
2068 Male, age 55, unknown 279.2
2098 Female, age 72, unknown 278.2
2809 Male, age 90, both hemispheres 222.5
2480 Male, age 75, both hemispheres 213.8
2820 Female, age 79, both hemispheres 194.7
2295 Male, age 66, both hemispheres 193.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 229.5
Samples: 204

Max nTPM: 398.3
Min nTPM: 61.7
Std nTPM: 72.3
Median nTPM: 232.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 398.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 397.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 397.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 394.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 393.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 381.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 376.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 370.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 369.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 368.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 363.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 355.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 342.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 340.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 333.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 331.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 330.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 328.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 319.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 317.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 314.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 314.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 309.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 308.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 306.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 304.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 304.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 304.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 301.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 300.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 300.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 297.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 296.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 295.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 294.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 293.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 293.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 293.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 293.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 292.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 292.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 286.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 285.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 283.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 281.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 281.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 281.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 280.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 279.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 278.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 276.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 273.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 272.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 272.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 272.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 270.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 270.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 268.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 268.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 267.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 261.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 261.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 261.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 260.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 259.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 257.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 257.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 257.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 257.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 257.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 257.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 252.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 252.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 252.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 251.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 250.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 248.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 248.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 247.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 247.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 246.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 246.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 246.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 246.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 244.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 244.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 243.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 243.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 240.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 240.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 239.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 239.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 238.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 238.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 237.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 235.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 235.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 235.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 235.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 234.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 233.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 233.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 232.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 232.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 231.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 230.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 230.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 229.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 228.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 227.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 226.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 225.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 225.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 224.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 224.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 223.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 223.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 222.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 221.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 221.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 219.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 219.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 218.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 217.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 216.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 213.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 212.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 212.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 210.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 210.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 208.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 208.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 207.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 206.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 203.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 203.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 203.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 202.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 202.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 201.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 201.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 201.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 200.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 199.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 198.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 197.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 193.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 192.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 187.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 184.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 183.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 183.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 182.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 178.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 178.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 176.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 176.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 175.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 173.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 172.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 169.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 167.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 167.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 167.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 166.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 163.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 162.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 162.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 161.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 161.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 161.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 159.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 158.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 156.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 150.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 149.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 149.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 143.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 142.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 137.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 135.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 133.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 133.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 131.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 130.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 124.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 121.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 119.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 116.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 115.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 112.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 109.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 109.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 108.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 103.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 92.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 90.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 82.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 79.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 75.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 74.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 66.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 64.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 61.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

457.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 457.7
FF:10159-103A6 76 years, female 529.5
FF:10181-103D1 60 years, female 385.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 190.2
Samples: 4

Max nTPM: 217.3
Min nTPM: 162.8
Sample A Female 189.6
Sample B Female 217.3
Sample C Male 162.8
Sample D Male 191.1
Ventral spinal cord
nTPM: 198.6
Samples: 4

Max nTPM: 233.9
Min nTPM: 155.4
Sample A Female 205.9
Sample B Female 199.2
Sample C Male 155.4
Sample D Male 233.9

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