On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
116.2
nTPM
HPA Brain:
277.4
nTPM
GTEx:
116.2
nTPM
FANTOM5:
722.2
Scaled Tags Per Million
Macaque:
254.2
nTPM
Mouse:
72.9
nTPM
Rat:
107.4
nTPM
Pig:
156.6
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
277.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 215.5
2411
Female, age 72, unknown
288.3
1870
Female, age 42, unknown
273.0
1830
Male, age 51, unknown
269.9
1833
Male, age 53, unknown
258.9
2019
Male, age 18, unknown
256.8
2828
Female, age 72, unknown
201.5
2666
Male, age 74, left hemisphere
163.9
2219
Male, age 76, both hemispheres
158.1
1827
Male, age 72, unknown
153.7
2586
Male, age 75, left hemisphere
131.3
Dorsal raphe nucleus nTPM: 179.5
2750
Male, age 76, both hemispheres
300.8
2016
Female, age 72, unknown
194.4
1828
Male, age 53, unknown
162.9
2298
Female, age 72, unknown
123.7
2047
Male, age 72, unknown
115.7
Inferior colliculus nTPM: 146.5
1890
Male, age 53, unknown
160.5
1848
Female, age 42, unknown
148.6
2097
Female, age 72, unknown
141.1
2849
Male, age 72, unknown
135.9
Median raphe nucleus nTPM: 129.9
2220
Male, age 76, midline
129.9
Periaquaductal grey, anterior nTPM: 140.1
2502
Female, age 75, unknown
167.4
1947
Male, age 18, unknown
148.8
1795
Male, age 51, unknown
104.0
Periaquaductal grey, dorsal nTPM: 126.3
2464
Female, age 72, unknown
180.9
2850
Male, age 76, both hemispheres
123.6
1831
Male, age 72, unknown
116.8
1840
Male, age 53, unknown
83.9
Periaquaductal grey, lateral nTPM: 139.3
2272
Male, age 74, both hemispheres
155.6
2053
Male, age 18, unknown
141.7
2140
Male, age 76, both hemispheres
120.6
Pretectal area nTPM: 144.7
2316
Male, age 76, right hemisphere
206.9
1815
Male, age 53, unknown
198.9
2273
Male, age 74, both hemispheres
156.8
1817
Female, age 42, unknown
154.4
2007
Male, age 72, unknown
152.3
2825
Male, age 18, unknown
147.1
2407
Male, age 75, both hemispheres
133.2
2667
Female, age 75, unknown
132.0
2224
Female, age 72, unknown
127.2
1944
Female, age 72, unknown
92.6
1816
Male, age 51, unknown
90.8
Red nucleus nTPM: 277.4
1865
Male, age 51, unknown
348.4
1821
Female, age 72, unknown
345.3
1904
Male, age 53, unknown
333.8
2769
Male, age 72, unknown
300.1
2227
Male, age 72, unknown
297.4
2503
Female, age 72, unknown
290.9
2785
Male, age 18, unknown
287.2
2823
Male, age 76, right hemisphere
286.2
1954
Female, age 42, unknown
279.4
2588
Male, age 74, left hemisphere
218.7
2725
Female, age 75, unknown
195.4
2584
Male, age 75, left hemisphere
146.3
Substantia nigra nTPM: 167.7
2409
Female, age 72, unknown
235.8
1851
Male, age 51, unknown
199.0
2590
Female, age 75, unknown
185.5
1889
Female, age 72, unknown
179.0
2241
Male, age 72, unknown
170.6
2699
Male, age 18, unknown
161.2
2583
Male, age 75, right hemisphere
153.3
1941
Male, age 53, unknown
144.9
1916
Female, age 42, unknown
133.0
2665
Male, age 74, both hemispheres
114.5
Superior colliculus nTPM: 182.2
1913
Female, age 42, unknown
285.0
1995
Male, age 72, unknown
273.9
1895
Male, age 76, right hemisphere
218.7
2587
Male, age 74, left hemisphere
211.0
1839
Male, age 51, unknown
190.2
2668
Female, age 75, unknown
183.1
1796
Male, age 53, unknown
134.7
2261
Male, age 18, unknown
114.2
2087
Female, age 72, unknown
113.1
2664
Male, age 75, both hemispheres
97.7
Ventral tegmental area nTPM: 187.8
2410
Female, age 72, unknown
257.6
2223
Female, age 72, unknown
231.1
1942
Male, age 51, unknown
165.8
2021
Male, age 53, unknown
165.3
1915
Female, age 42, unknown
164.0
2218
Male, age 76, both hemispheres
142.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
116.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 116.2
Samples: 183
Max nTPM: 330.4
Min nTPM: 10.1
Std nTPM: 50.0
Median nTPM: 106.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
330.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
275.8
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
275.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
270.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
243.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
235.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
223.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
212.9
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
210.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
209.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
209.1
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
206.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
201.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
199.3
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
199.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
195.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
190.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
186.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
185.1
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
184.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
177.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
173.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
172.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
172.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
172.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
168.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
165.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
164.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
163.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
160.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
158.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
156.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
154.3
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
153.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
153.6
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
152.4
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
152.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
151.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
149.5
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
148.6
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
145.9
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
143.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
142.8
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
139.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
137.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
136.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
135.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
135.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
134.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
134.4
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
133.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
132.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
131.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
131.1
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
130.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
129.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
129.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
128.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
128.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
126.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
124.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
123.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
123.2
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
122.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
122.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
122.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
122.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
121.8
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
119.9
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
119.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
118.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
118.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
117.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
117.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
117.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
115.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
114.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
112.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
112.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
112.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
110.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
110.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
110.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
110.1
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
109.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
108.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
108.5
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
108.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
107.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
107.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
106.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
106.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
105.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
105.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
104.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
104.6
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
103.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
103.5
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
103.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
102.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
102.6
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
102.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
102.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
102.2
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
100.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
100.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
98.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
98.7
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
98.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
98.0
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
97.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
96.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
95.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
95.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
94.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
94.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
93.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
92.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
92.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
91.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
90.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
90.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
89.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
88.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
88.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
88.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
88.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
87.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
86.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
85.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
84.7
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
84.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
83.8
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
83.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
83.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
82.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
80.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
80.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
79.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
79.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
79.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
79.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
79.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
79.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
78.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
78.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
76.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
76.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
75.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
75.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
73.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
73.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
72.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
72.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
71.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
70.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
70.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
70.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
69.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
69.0
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
68.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
67.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
66.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
65.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
65.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
64.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
64.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
64.3
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
63.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
62.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
60.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
57.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
57.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
57.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
54.6
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
54.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
52.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
50.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
48.4
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
39.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
37.1
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
24.9
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
10.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
254.2
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 254.2
Samples: 1
Max nTPM: 254.2
Min nTPM: 254.2
Sample A
254.2
Midbrain nTPM: 101.3
Samples: 1
Max nTPM: 101.3
Min nTPM: 101.3
Sample A
101.3
Superior colliculi nTPM: 130.3
Samples: 1
Max nTPM: 130.3
Min nTPM: 130.3
Sample A
130.3
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
156.6
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 156.6
Samples: 3
Max nTPM: 192.6
Min nTPM: 135.7
Sample A
Female
192.6
Sample B
Female
135.7
Sample C
Male
141.5
Midbrain nTPM: 146.9
Samples: 3
Max nTPM: 226.8
Min nTPM: 106.3
Sample B
Female
226.8
Sample C
Male
107.5
Sample D
Male
106.3
Periaqueductal gray nTPM: 149.3
Samples: 3
Max nTPM: 189.8
Min nTPM: 111.9
Sample B
Female
189.8
Sample C
Male
111.9
Sample D
Male
146.2
Superior colliculi nTPM: 148.9
Samples: 4
Max nTPM: 167.9
Min nTPM: 112.6
Sample A
Female
163.0
Sample B
Female
112.6
Sample C
Male
151.9
Sample D
Male
167.9
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
72.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 72.9
Samples: 4
Max nTPM: 78.4
Min nTPM: 67.0
Sample A
67.8
Sample B
67.0
Sample C
78.4
Sample D
78.4
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
107.4
Rat sample
Sample description
nTPM
Midbrain nTPM: 107.4
Samples: 4
Max nTPM: 113.4
Min nTPM: 103.2
Sample A
108.6
Sample A
113.4
Sample A
104.5
Sample A
103.2
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The Human Protein Atlas project is funded
