A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.9
nTPM
Monaco:
11.3
nTPM
Schmiedel:
10.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.9
HPA sample
nTPM
Classical monocyte nTPM: 1.9
Samples: 6
Max nTPM: 2.9
Min nTPM: 1.3
P10809_1003
2.9
P10809_1020
2.3
P10809_1039
1.5
P10809_1058
1.3
P10809_1080
1.6
P10809_1107
2.0
Intermediate monocyte nTPM: 1.8
Samples: 6
Max nTPM: 2.9
Min nTPM: 0.0
P10809_1004
2.8
P10809_1023
0.0
P10809_1042
2.1
P10809_1061
2.9
P10809_1081
1.7
P10809_1108
1.4
Non-classical monocyte nTPM: 1.4
Samples: 5
Max nTPM: 2.0
Min nTPM: 0.0
P10809_1005
1.9
P10809_1053
1.9
P10809_1072
0.0
P10809_1082
1.3
P10809_1109
2.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.3
Monaco sample
nTPM
Classical monocyte nTPM: 10.3
Samples: 4
Max nTPM: 15.1
Min nTPM: 5.3
RHH5313_R3680
14.7
RHH5221_R3593
5.3
RHH5250_R3622
15.1
RHH5279_R3651
6.2
Intermediate monocyte nTPM: 11.3
Samples: 4
Max nTPM: 19.4
Min nTPM: 5.8
RHH5314_R3681
5.8
RHH5222_R3594
10.4
RHH5251_R3623
19.4
RHH5280_R3652
9.5
Non-classical monocyte nTPM: 6.4
Samples: 4
Max nTPM: 12.1
Min nTPM: 0.7
RHH5315_R3682
5.7
RHH5223_R3595
0.7
RHH5252_R3624
7.3
RHH5281_R3653
12.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.1
Schmiedel sample id
TPM
Classical monocyte TPM: 10.1
Samples: 91
Max TPM: 21.8
Min TPM: 3.8
MONOCYTES_1
21.8
MONOCYTES_2
18.0
MONOCYTES_3
17.8
MONOCYTES_4
17.1
MONOCYTES_5
16.5
MONOCYTES_6
15.1
MONOCYTES_7
14.8
MONOCYTES_8
14.5
MONOCYTES_9
13.4
MONOCYTES_10
13.3
MONOCYTES_11
13.3
MONOCYTES_12
13.1
MONOCYTES_13
12.9
MONOCYTES_14
12.9
MONOCYTES_15
12.9
MONOCYTES_16
12.8
MONOCYTES_17
12.5
MONOCYTES_18
12.5
MONOCYTES_19
12.4
MONOCYTES_20
12.3
MONOCYTES_21
12.2
MONOCYTES_22
12.1
MONOCYTES_23
12.1
MONOCYTES_24
11.9
MONOCYTES_25
11.5
MONOCYTES_26
11.5
MONOCYTES_27
11.5
MONOCYTES_28
11.3
MONOCYTES_29
11.3
MONOCYTES_30
11.0
MONOCYTES_31
11.0
MONOCYTES_32
10.9
MONOCYTES_33
10.9
MONOCYTES_34
10.9
MONOCYTES_35
10.8
MONOCYTES_36
10.8
MONOCYTES_37
10.8
MONOCYTES_38
10.7
MONOCYTES_39
10.6
MONOCYTES_40
10.5
MONOCYTES_41
10.3
MONOCYTES_42
10.2
MONOCYTES_43
10.1
MONOCYTES_44
10.1
MONOCYTES_45
10.1
MONOCYTES_46
9.9
MONOCYTES_47
9.8
MONOCYTES_48
9.7
MONOCYTES_49
9.7
MONOCYTES_50
9.7
MONOCYTES_51
9.6
MONOCYTES_52
9.6
MONOCYTES_53
9.5
MONOCYTES_54
9.2
MONOCYTES_55
9.2
MONOCYTES_56
9.2
MONOCYTES_57
8.8
MONOCYTES_58
8.7
MONOCYTES_59
8.5
MONOCYTES_60
8.4
MONOCYTES_61
8.4
MONOCYTES_62
8.4
MONOCYTES_63
8.3
MONOCYTES_64
8.2
MONOCYTES_65
8.0
MONOCYTES_66
8.0
MONOCYTES_67
8.0
MONOCYTES_68
8.0
MONOCYTES_69
7.8
MONOCYTES_70
7.7
MONOCYTES_71
7.5
MONOCYTES_72
7.3
MONOCYTES_73
7.0
MONOCYTES_74
7.0
MONOCYTES_75
7.0
MONOCYTES_76
7.0
MONOCYTES_77
6.9
MONOCYTES_78
6.8
MONOCYTES_79
6.7
MONOCYTES_80
6.6
MONOCYTES_81
6.6
MONOCYTES_82
6.5
MONOCYTES_83
6.3
MONOCYTES_84
6.2
MONOCYTES_85
6.2
MONOCYTES_86
5.3
MONOCYTES_87
5.1
MONOCYTES_88
5.1
MONOCYTES_89
4.9
MONOCYTES_90
4.8
MONOCYTES_91
3.8
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Non-classical monocyte TPM: 5.8
Samples: 90
Max TPM: 12.5
Min TPM: 0.9
M2_1
12.5
M2_2
11.4
M2_3
9.9
M2_4
9.7
M2_5
9.4
M2_6
9.4
M2_7
9.3
M2_8
9.3
M2_9
9.2
M2_10
9.1
M2_11
8.7
M2_12
8.6
M2_13
8.5
M2_14
8.4
M2_15
8.1
M2_16
8.0
M2_17
7.9
M2_18
7.7
M2_19
7.6
M2_20
7.6
M2_21
7.4
M2_22
7.3
M2_23
7.2
M2_24
7.2
M2_25
7.1
M2_26
6.9
M2_27
6.8
M2_28
6.8
M2_29
6.7
M2_30
6.7
M2_31
6.7
M2_32
6.7
M2_33
6.5
M2_34
6.5
M2_35
6.4
M2_36
6.4
M2_37
6.3
M2_38
6.2
M2_39
6.2
M2_40
6.1
M2_41
6.0
M2_42
6.0
M2_43
6.0
M2_44
6.0
M2_45
5.8
M2_46
5.6
M2_47
5.6
M2_48
5.5
M2_49
5.5
M2_50
5.4
M2_51
5.4
M2_52
5.3
M2_53
5.3
M2_54
5.2
M2_55
5.2
M2_56
5.2
M2_57
5.2
M2_58
5.2
M2_59
5.0
M2_60
5.0
M2_61
4.9
M2_62
4.7
M2_63
4.6
M2_64
4.4
M2_65
4.1
M2_66
4.1
M2_67
4.1
M2_68
4.0
M2_69
4.0
M2_70
3.9
M2_71
3.8
M2_72
3.7
M2_73
3.7
M2_74
3.6
M2_75
3.3
M2_76
3.2
M2_77
3.1
M2_78
3.1
M2_79
3.1
M2_80
3.0
M2_81
2.7
M2_82
2.7
M2_83
2.6
M2_84
2.5
M2_85
2.4
M2_86
2.4
M2_87
2.3
M2_88
1.6
M2_89
1.0
M2_90
0.9
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