MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.2 nTPM
HPA Brain:223.5 nTPM
GTEx:85.2 nTPM
FANTOM5:530.9 Scaled Tags Per Million
Pig:163.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 223.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 215.0
2828 Female, age 72, unknown 277.5
2666 Male, age 74, left hemisphere 262.4
2586 Male, age 75, left hemisphere 258.2
2219 Male, age 76, both hemispheres 227.3
1830 Male, age 51, unknown 224.7
1833 Male, age 53, unknown 223.9
1870 Female, age 42, unknown 188.0
2411 Female, age 72, unknown 164.5
1827 Male, age 72, unknown 162.0
2019 Male, age 18, unknown 161.6
Dorsal raphe nucleus
nTPM: 186.3
2016 Female, age 72, unknown 249.2
1828 Male, age 53, unknown 191.3
2047 Male, age 72, unknown 175.6
2750 Male, age 76, both hemispheres 172.9
2298 Female, age 72, unknown 142.7
Inferior colliculus
nTPM: 174.6
2849 Male, age 72, unknown 230.8
1848 Female, age 42, unknown 181.6
1890 Male, age 53, unknown 172.2
2097 Female, age 72, unknown 113.8
Median raphe nucleus
nTPM: 216.7
2220 Male, age 76, midline 216.7
Periaquaductal grey, anterior
nTPM: 174.2
2502 Female, age 75, unknown 190.9
1795 Male, age 51, unknown 187.9
1947 Male, age 18, unknown 143.8
Periaquaductal grey, dorsal
nTPM: 219.1
2850 Male, age 76, both hemispheres 266.3
1831 Male, age 72, unknown 251.3
1840 Male, age 53, unknown 179.4
2464 Female, age 72, unknown 179.4
Periaquaductal grey, lateral
nTPM: 223.5
2272 Male, age 74, both hemispheres 251.3
2140 Male, age 76, both hemispheres 210.3
2053 Male, age 18, unknown 209.0
Pretectal area
nTPM: 179.7
2407 Male, age 75, both hemispheres 248.4
2825 Male, age 18, unknown 198.8
1815 Male, age 53, unknown 197.9
1817 Female, age 42, unknown 189.2
2273 Male, age 74, both hemispheres 181.4
2224 Female, age 72, unknown 171.8
2007 Male, age 72, unknown 170.0
2316 Male, age 76, right hemisphere 166.2
2667 Female, age 75, unknown 165.6
1944 Female, age 72, unknown 148.2
1816 Male, age 51, unknown 139.6
Red nucleus
nTPM: 211.5
2584 Male, age 75, left hemisphere 286.1
1865 Male, age 51, unknown 236.1
2503 Female, age 72, unknown 232.3
1904 Male, age 53, unknown 214.2
2227 Male, age 72, unknown 210.6
2785 Male, age 18, unknown 207.9
2725 Female, age 75, unknown 207.5
2588 Male, age 74, left hemisphere 201.1
2769 Male, age 72, unknown 196.5
2823 Male, age 76, right hemisphere 193.5
1954 Female, age 42, unknown 191.3
1821 Female, age 72, unknown 160.5
Substantia nigra
nTPM: 220.3
2699 Male, age 18, unknown 385.5
2665 Male, age 74, both hemispheres 286.0
2583 Male, age 75, right hemisphere 263.3
2590 Female, age 75, unknown 242.2
1851 Male, age 51, unknown 210.3
1916 Female, age 42, unknown 193.2
1941 Male, age 53, unknown 180.5
1889 Female, age 72, unknown 167.6
2241 Male, age 72, unknown 149.5
2409 Female, age 72, unknown 125.1
Superior colliculus
nTPM: 205.5
2664 Male, age 75, both hemispheres 293.6
1995 Male, age 72, unknown 262.9
1913 Female, age 42, unknown 255.0
2587 Male, age 74, left hemisphere 236.1
1839 Male, age 51, unknown 219.7
1796 Male, age 53, unknown 195.6
2668 Female, age 75, unknown 168.0
2261 Male, age 18, unknown 161.9
2087 Female, age 72, unknown 141.0
1895 Male, age 76, right hemisphere 121.7
Ventral tegmental area
nTPM: 216.3
2223 Female, age 72, unknown 246.8
2021 Male, age 53, unknown 236.9
2218 Male, age 76, both hemispheres 222.6
1915 Female, age 42, unknown 208.2
2410 Female, age 72, unknown 194.6
1942 Male, age 51, unknown 188.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 85.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.2
Samples: 183

Max nTPM: 209.3
Min nTPM: 40.3
Std nTPM: 27.8
Median nTPM: 83.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 209.3
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 184.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 160.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 151.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 149.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 147.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 145.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 143.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 139.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 138.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 138.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 530.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 530.9
FF:10158-103A5 76 years, female 530.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 163.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 163.6
Samples: 4

Max nTPM: 173.6
Min nTPM: 143.0
Sample A Female 164.1
Sample B Female 173.6
Sample C Male 143.0
Sample D Male 173.6
Midbrain
nTPM: 156.6
Samples: 4

Max nTPM: 235.3
Min nTPM: 119.9
Sample A Female 235.3
Sample B Female 140.1
Sample C Male 130.9
Sample D Male 119.9
Periaqueductal gray
nTPM: 131.3
Samples: 3

Max nTPM: 141.6
Min nTPM: 124.2
Sample B Female 124.2
Sample C Male 141.6
Sample D Male 128.1
Superior colliculi
nTPM: 153.5
Samples: 4

Max nTPM: 175.1
Min nTPM: 136.4
Sample A Female 175.1
Sample B Female 136.4
Sample C Male 146.6
Sample D Male 155.9

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