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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:478.7 nTPM
GTEx:478.7 nTPM
FANTOM5:970.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA045423Antibody CAB011536
Squamous epithelial cells Not detectedMedium





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

478.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 478.7
Samples: 170

Max nTPM: 1751.0
Min nTPM: 174.7
Std nTPM: 248.2
Median nTPM: 420.3
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 1751.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1451.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1358.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1096.3
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1004.2
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 995.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 960.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 914.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 911.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 906.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 845.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 836.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 801.2
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 800.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 800.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 796.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 790.3
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 788.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 776.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 773.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 766.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 765.3
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 744.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 735.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 728.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 723.6
GTEX-S341-1226-SM-4AD5S 40-49 years, female 718.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 711.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 707.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 699.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 697.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 693.8
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 680.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 666.8
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 662.2
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 656.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 646.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 646.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 644.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 606.4
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 603.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 599.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 592.9
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 591.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 590.6
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 589.9
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 583.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 580.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 575.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 572.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 565.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 551.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 545.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 543.5
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 532.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 531.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 523.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 520.9
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 520.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 517.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 513.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 513.3
GTEX-1C475-0526-SM-793AC 40-49 years, female 512.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 507.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 506.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 501.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 500.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 499.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 479.5
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 479.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 469.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 468.2
GTEX-16NPV-2526-SM-6M483 50-59 years, female 467.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 460.7
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 459.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 458.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 448.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 447.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 445.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 445.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 444.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 438.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 438.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 431.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 420.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 419.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 419.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 414.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 414.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 412.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 390.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 388.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 386.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 386.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 380.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 378.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 378.1
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 375.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 365.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 364.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 362.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 361.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 359.4
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 356.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 356.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 351.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 351.8
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 350.0
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 348.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 345.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 344.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 341.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 337.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 334.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 333.9
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 333.5
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 324.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 320.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 319.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 314.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 314.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 314.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 313.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 312.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 305.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 305.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 302.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 300.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 287.9
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 287.6
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 280.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 273.1
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 271.4
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 271.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 269.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 266.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 263.9
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 263.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 254.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 251.8
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 251.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 250.9
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 247.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 246.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 242.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 241.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 240.8
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 240.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 240.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 240.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 237.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 234.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 231.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 230.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 230.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 229.8
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 222.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 221.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 215.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 214.4
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 211.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 210.7
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 209.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 205.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 205.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 195.7
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 190.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 188.9
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 186.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 174.7
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

970.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 970.9
FF:10204-103F6 68 years, female 970.9

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