A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.1
nTPM
Monaco:
43.7
nTPM
Schmiedel:
20.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.1
HPA sample
nTPM
Classical monocyte nTPM: 2.1
Samples: 6
Max nTPM: 3.0
Min nTPM: 1.2
P10809_1003
2.8
P10809_1020
1.9
P10809_1039
1.2
P10809_1058
3.0
P10809_1080
1.7
P10809_1107
2.2
Intermediate monocyte nTPM: 2.0
Samples: 6
Max nTPM: 2.4
Min nTPM: 1.3
P10809_1004
2.0
P10809_1023
2.1
P10809_1042
2.4
P10809_1061
2.1
P10809_1081
1.8
P10809_1108
1.3
Non-classical monocyte nTPM: 2.1
Samples: 5
Max nTPM: 4.0
Min nTPM: 1.3
P10809_1005
4.0
P10809_1053
1.4
P10809_1072
1.3
P10809_1082
1.7
P10809_1109
2.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.7
Monaco sample
nTPM
Classical monocyte nTPM: 43.7
Samples: 4
Max nTPM: 62.2
Min nTPM: 27.0
RHH5313_R3680
34.8
RHH5221_R3593
62.2
RHH5250_R3622
50.6
RHH5279_R3651
27.0
Intermediate monocyte nTPM: 34.2
Samples: 4
Max nTPM: 51.7
Min nTPM: 25.6
RHH5314_R3681
30.1
RHH5222_R3594
51.7
RHH5251_R3623
29.4
RHH5280_R3652
25.6
Non-classical monocyte nTPM: 28.5
Samples: 4
Max nTPM: 40.9
Min nTPM: 21.6
RHH5315_R3682
22.6
RHH5223_R3595
40.9
RHH5252_R3624
29.1
RHH5281_R3653
21.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.3
Schmiedel sample id
TPM
Classical monocyte TPM: 20.3
Samples: 91
Max TPM: 30.0
Min TPM: 11.4
MONOCYTES_1
30.0
MONOCYTES_2
29.9
MONOCYTES_3
29.5
MONOCYTES_4
29.3
MONOCYTES_5
27.3
MONOCYTES_6
26.8
MONOCYTES_7
26.1
MONOCYTES_8
25.6
MONOCYTES_9
25.2
MONOCYTES_10
25.0
MONOCYTES_11
24.7
MONOCYTES_12
24.1
MONOCYTES_13
23.9
MONOCYTES_14
23.8
MONOCYTES_15
23.7
MONOCYTES_16
23.4
MONOCYTES_17
23.3
MONOCYTES_18
23.2
MONOCYTES_19
23.1
MONOCYTES_20
23.0
MONOCYTES_21
22.9
MONOCYTES_22
22.7
MONOCYTES_23
22.7
MONOCYTES_24
22.6
MONOCYTES_25
22.6
MONOCYTES_26
22.6
MONOCYTES_27
22.3
MONOCYTES_28
22.3
MONOCYTES_29
22.1
MONOCYTES_30
22.1
MONOCYTES_31
21.7
MONOCYTES_32
21.7
MONOCYTES_33
21.6
MONOCYTES_34
21.5
MONOCYTES_35
21.5
MONOCYTES_36
21.5
MONOCYTES_37
21.4
MONOCYTES_38
21.3
MONOCYTES_39
21.2
MONOCYTES_40
21.0
MONOCYTES_41
20.6
MONOCYTES_42
20.5
MONOCYTES_43
20.4
MONOCYTES_44
20.2
MONOCYTES_45
20.0
MONOCYTES_46
20.0
MONOCYTES_47
20.0
MONOCYTES_48
19.9
MONOCYTES_49
19.8
MONOCYTES_50
19.5
MONOCYTES_51
19.5
MONOCYTES_52
19.5
MONOCYTES_53
19.4
MONOCYTES_54
19.1
MONOCYTES_55
19.0
MONOCYTES_56
18.9
MONOCYTES_57
18.9
MONOCYTES_58
18.8
MONOCYTES_59
18.8
MONOCYTES_60
18.7
MONOCYTES_61
18.7
MONOCYTES_62
18.5
MONOCYTES_63
18.4
MONOCYTES_64
18.3
MONOCYTES_65
17.9
MONOCYTES_66
17.8
MONOCYTES_67
17.7
MONOCYTES_68
17.7
MONOCYTES_69
17.7
MONOCYTES_70
17.6
MONOCYTES_71
17.4
MONOCYTES_72
17.3
MONOCYTES_73
16.9
MONOCYTES_74
16.8
MONOCYTES_75
16.7
MONOCYTES_76
16.5
MONOCYTES_77
16.4
MONOCYTES_78
16.2
MONOCYTES_79
16.1
MONOCYTES_80
16.1
MONOCYTES_81
16.1
MONOCYTES_82
16.1
MONOCYTES_83
16.0
MONOCYTES_84
15.9
MONOCYTES_85
15.4
MONOCYTES_86
15.2
MONOCYTES_87
14.9
MONOCYTES_88
14.3
MONOCYTES_89
14.1
MONOCYTES_90
12.7
MONOCYTES_91
11.4
Show allShow less
Non-classical monocyte TPM: 16.7
Samples: 90
Max TPM: 25.5
Min TPM: 7.1
M2_1
25.5
M2_2
24.9
M2_3
23.4
M2_4
23.3
M2_5
23.1
M2_6
23.0
M2_7
22.9
M2_8
22.3
M2_9
21.6
M2_10
21.4
M2_11
21.4
M2_12
21.3
M2_13
21.2
M2_14
21.2
M2_15
21.1
M2_16
21.0
M2_17
20.9
M2_18
20.1
M2_19
20.1
M2_20
20.0
M2_21
19.7
M2_22
19.7
M2_23
19.6
M2_24
19.6
M2_25
19.5
M2_26
19.5
M2_27
19.5
M2_28
19.4
M2_29
19.3
M2_30
19.2
M2_31
19.2
M2_32
19.2
M2_33
19.1
M2_34
18.9
M2_35
18.8
M2_36
18.4
M2_37
18.3
M2_38
18.3
M2_39
18.0
M2_40
17.9
M2_41
17.8
M2_42
17.8
M2_43
17.7
M2_44
17.6
M2_45
17.2
M2_46
17.1
M2_47
17.0
M2_48
17.0
M2_49
16.9
M2_50
16.8
M2_51
16.7
M2_52
16.7
M2_53
16.7
M2_54
16.6
M2_55
16.5
M2_56
15.7
M2_57
15.7
M2_58
15.3
M2_59
15.3
M2_60
15.1
M2_61
15.1
M2_62
14.8
M2_63
14.5
M2_64
14.5
M2_65
14.3
M2_66
14.2
M2_67
14.0
M2_68
13.7
M2_69
13.4
M2_70
13.3
M2_71
13.2
M2_72
13.2
M2_73
13.0
M2_74
12.7
M2_75
12.7
M2_76
11.1
M2_77
11.1
M2_78
11.0
M2_79
11.0
M2_80
10.9
M2_81
10.8
M2_82
10.5
M2_83
9.9
M2_84
9.7
M2_85
9.5
M2_86
9.4
M2_87
8.7
M2_88
8.5
M2_89
7.6
M2_90
7.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
