HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		105.944
RNA expressioni
Consensus:29.8 nTPM
HPA Brain:177.7 nTPM
GTEx:29.8 nTPM
FANTOM5:199.5 Scaled Tags Per Million
Pig:186.2 nTPM
Mouse:431.5 nTPM
Allen mouse:21.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA011166Antibody HPA012945Antibody CAB005605
Glial cells Not detectedNot detectedMedium
Neuronal cells HighHighMedium







HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA011166
Hippocampal formation mean intensity 105.944
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 67.210
Molecular layer of the dentate gyrus 77.398
Granular dentate gyrus 48.162
CA1 - oriens layer 105.944
CA1 - pyramidal layer 80.332
CA1 - radiatum layer 101.993
CA2 - oriens layer 105.656
CA2 - pyramidal layer 68.504
CA2 - radiatum layer 99.514
CA3 - oriens layer 103.637
CA3 - pyramidal layer 62.782
CA3 - radiatum layer 100.232
Stratum lucidum 64.031
Lacunosum moleculare 87.961
Subiculum 98.851

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 177.7
Sample id Sample description nTPM
Hippocampus
nTPM: 112.7
1898 Male, age 80, left hemisphere 165.7
2621 Female, age 67, right hemisphere 116.8
1911 Female, age 85, right hemisphere 113.4
1855 Male, age 76, left hemisphere 113.3
2148 Female, age 91, left hemisphere 95.2
2529 Female, age 94, left hemisphere 72.1
Dentate gyrus
nTPM: 118.4
1927 Female, age 91, both hemispheres 172.4
2246 Female, age 85, both hemispheres 120.8
2531 Female, age 67, both hemispheres 120.6
2010 Male, age 76, both hemispheres 116.4
2528 Male, age 74, both hemispheres 98.7
2530 Female, age 94, left hemisphere 81.5
Entorhinal gyrus
nTPM: 126.5
2613 Female, age 94, left hemisphere 182.3
1938 Female, age 85, left hemisphere 174.8
1787 Male, age 76, left hemisphere 123.8
2764 Male, age 80, right hemisphere 120.7
2686 Male, age 75, right hemisphere 92.2
2117 Female, age 91, right hemisphere 65.0
Hippocampus, CA1
nTPM: 148.2
2749 Male, age 80, left hemisphere 286.1
1873 Female, age 85, both hemispheres 155.8
2045 Male, age 76, both hemispheres 111.9
2527 Male, age 74, both hemispheres 104.8
2082 Female, age 91, right hemisphere 82.3
Hippocampus, CA2
nTPM: 117.6
1892 Male, age 76, both hemispheres 175.6
1963 Male, age 80, left hemisphere 146.3
1940 Female, age 85, left hemisphere 115.4
2249 Male, age 74, both hemispheres 97.8
2113 Female, age 91, right hemisphere 86.6
2437 Female, age 94, left hemisphere 83.9
Hippocampus, CA3
nTPM: 152.9
2137 Male, age 80, left hemisphere 302.4
2620 Female, age 94, left hemisphere 152.2
1867 Male, age 76, both hemispheres 136.6
2861 Female, age 67, both hemispheres 110.3
1891 Female, age 85, both hemispheres 108.2
2436 Male, age 74, both hemispheres 107.6
Parahippocampal cortex
nTPM: 126.4
1850 Male, age 80, both hemispheres 192.3
1990 Female, age 91, right hemisphere 144.1
1933 Female, age 85, both hemispheres 134.6
2693 Female, age 94, both hemispheres 133.2
2245 Female, age 91, both hemispheres 127.9
2250 Female, age 67, right hemisphere 120.2
2532 Female, age 72, left hemisphere 114.4
2622 Female, age 67, right hemisphere 107.9
2018 Male, age 76, both hemispheres 105.1
2692 Male, age 74, both hemispheres 84.0
Perirhinal gyrus
nTPM: 177.7
1847 Female, age 91, left hemisphere 203.4
1841 Female, age 85, right hemisphere 198.3
1794 Male, age 80, right hemisphere 180.7
2521 Female, age 94, right hemisphere 174.0
2848 Male, age 76, right hemisphere 132.0
Subiculum
nTPM: 105.2
1901 Male, age 80, both hemispheres 157.9
1977 Female, age 85, both hemispheres 126.2
2042 Male, age 76, both hemispheres 100.0
2438 Female, age 94, left hemisphere 99.1
2619 Male, age 74, both hemispheres 75.4
2729 Female, age 91, right hemisphere 72.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 29.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.8
Samples: 255

Max nTPM: 118.3
Min nTPM: 5.7
Std nTPM: 18.2
Median nTPM: 26.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 118.3
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 98.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 92.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 91.1
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 88.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 84.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 81.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 75.9
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 70.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 63.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 63.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 199.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 199.5
FF:10169-103B7 60 years, female 266.9
FF:10153-102I9 76 years, female 132.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 186.2
Pig sample Sample description nTPM
Subiculum
nTPM: 90.5
Samples: 4

Max nTPM: 124.1
Min nTPM: 73.4
Sample A Female 124.1
Sample B Female 77.8
Sample C Male 86.5
Sample D Male 73.4
Dorsal hippocampus
nTPM: 186.2
Samples: 4

Max nTPM: 233.0
Min nTPM: 143.0
Sample A Female 220.3
Sample B Female 233.0
Sample C Male 143.0
Sample D Male 148.3
Entorhinal cortex
nTPM: 116.6
Samples: 4

Max nTPM: 128.2
Min nTPM: 104.5
Sample A Female 120.2
Sample B Female 128.2
Sample C Male 104.5
Sample D Male 113.4
Ventral hippocampus
nTPM: 143.4
Samples: 4

Max nTPM: 274.6
Min nTPM: 87.7
Sample A Female 119.4
Sample B Female 87.7
Sample C Male 91.8
Sample D Male 274.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 431.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 249.4
Samples: 4

Max nTPM: 274.5
Min nTPM: 231.5
Sample A Male 274.5
Sample B Male 236.8
Sample C Female 231.5
Sample D Female 254.9
Hippocampal formation
nTPM: 431.5
Samples: 4

Max nTPM: 562.5
Min nTPM: 308.7
Sample A Male 325.0
Sample B Male 529.7
Sample C Female 562.5
Sample D Female 308.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 21.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 21.8
75197618 Antisense, RP_060502_01_C12, Mouse strain C57BL/6J (56 days, male) 21.8
77280449 Antisense, RP_070116_01_F06, Mouse strain C57BL/6J (56 days, male) 21.8

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo