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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
95.8
Sample id
Sample description
nTPM
Amygdala nTPM: 79.8
2814
Male, age 76, right hemisphere
148.8
2517
Female, age 94, left hemisphere
78.3
1987
Female, age 91, left hemisphere
61.9
2514
Male, age 75, right hemisphere
60.6
2695
Female, age 67, right hemisphere
49.3
Basal amygdala nTPM: 89.5
1955
Male, age 76, both hemispheres
118.3
2110
Male, age 80, left hemisphere
107.2
2243
Female, age 91, right hemisphere
101.7
2685
Female, age 94, left hemisphere
97.4
2827
Female, age 67, right hemisphere
57.2
2609
Male, age 75, right hemisphere
55.2
Central amygdala nTPM: 74.6
1905
Male, age 76, both hemispheres
119.3
2239
Male, age 80, left hemisphere
81.9
2826
Female, age 94, left hemisphere
62.5
2515
Male, age 75, right hemisphere
56.9
2701
Female, age 91, right hemisphere
52.5
Corticomedial amygdala nTPM: 95.8
2240
Male, age 76, both hemispheres
126.6
2829
Male, age 80, left hemisphere
117.9
2429
Female, age 94, left hemisphere
105.9
2242
Female, age 91, right hemisphere
86.0
2535
Female, age 67, right hemisphere
74.3
2428
Male, age 75, right hemisphere
64.0
Lateral amygdala nTPM: 72.4
1883
Male, age 76, both hemispheres
130.4
2534
Female, age 94, left hemisphere
90.5
2256
Male, age 80, left hemisphere
65.4
2516
Male, age 75, right hemisphere
55.6
2255
Female, age 91, right hemisphere
50.6
2830
Female, age 67, right hemisphere
42.2
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 20.7
Samples: 181
Max nTPM: 61.0
Min nTPM: 6.3
Std nTPM: 10.1
Median nTPM: 18.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
61.0
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
58.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
55.7
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
54.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
51.6
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
49.4
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
43.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
41.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
41.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
39.7
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
39.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
35.7
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
35.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
35.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
35.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
34.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
34.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
34.0
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
33.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
33.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
33.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
33.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
32.5
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
32.1
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
31.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
31.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
31.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
31.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
30.7
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
30.1
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
29.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
28.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
27.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
27.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
27.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
27.0
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
26.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
26.9
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
26.8
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
26.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
26.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
26.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
25.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
25.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
24.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
24.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
24.0
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
23.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
23.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
23.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
23.0
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
22.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
22.8
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
22.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
22.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
22.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
22.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
22.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
22.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
22.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
21.9
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
21.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
21.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
21.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
21.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
21.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
21.4
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
21.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
21.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
21.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
21.1
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
21.1
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
21.1
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
20.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
20.8
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
20.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
20.5
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
20.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
20.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
20.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
19.8
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
19.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
19.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
19.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
19.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
19.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
19.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
18.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
18.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
18.4
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
18.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
18.2
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
18.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
18.0
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
17.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
17.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
17.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
17.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
16.9
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
16.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
16.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
16.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
16.7
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
16.6
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
16.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
16.4
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
16.3
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
16.2
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
16.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
16.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
16.0
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
15.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
15.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
15.7
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
15.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
15.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
15.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
15.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
15.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
15.1
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
15.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
14.9
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
14.8
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
14.7
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
14.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
14.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
14.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
14.4
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
14.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
14.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
14.2
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
14.2
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
14.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
14.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
14.1
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
14.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
13.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
13.7
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
13.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
13.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
13.3
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
13.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
13.1
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
13.0
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
12.9
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
12.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
12.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
12.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
12.4
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
12.3
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
12.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
12.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
11.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
11.8
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
11.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
11.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
11.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
11.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
11.2
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
11.1
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
11.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
11.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
11.1
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
10.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
10.9
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
10.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
10.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
10.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
10.2
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
9.9
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
9.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
9.4
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
9.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
9.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
8.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
8.8
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
7.6
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
7.4
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
7.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
6.4
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
6.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
65.7
Pig sample
Sample description
nTPM
Amygdala nTPM: 65.8
Samples: 4
Max nTPM: 86.3
Min nTPM: 50.3
Sample A
Female
86.3
Sample B
Female
50.3
Sample C
Male
57.0
Sample D
Male
69.4
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
185.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 185.4
Samples: 4
Max nTPM: 204.2
Min nTPM: 173.7
Sample A
Male
179.9
Sample B
Male
173.7
Sample C
Female
204.2
Sample D
Female
183.6
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
