BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2484.1 nTPM
HPA Brain:501.6 nTPM
GTEx:2484.1 nTPM
FANTOM5:89.6 Scaled Tags Per Million
Macaque:499.5 nTPM
Rat:2.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 501.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 395.8
2666 Male, age 74, left hemisphere 470.4
1870 Female, age 42, unknown 453.2
2828 Female, age 72, unknown 421.8
1827 Male, age 72, unknown 420.4
2019 Male, age 18, unknown 396.7
2586 Male, age 75, left hemisphere 381.8
1833 Male, age 53, unknown 367.3
2219 Male, age 76, both hemispheres 359.2
2411 Female, age 72, unknown 357.3
1830 Male, age 51, unknown 329.5
Dorsal raphe nucleus
nTPM: 392.9
2298 Female, age 72, unknown 430.0
2016 Female, age 72, unknown 419.0
2750 Male, age 76, both hemispheres 407.0
1828 Male, age 53, unknown 361.5
2047 Male, age 72, unknown 347.2
Inferior colliculus
nTPM: 392.6
1890 Male, age 53, unknown 440.7
2097 Female, age 72, unknown 412.1
1848 Female, age 42, unknown 373.3
2849 Male, age 72, unknown 344.1
Median raphe nucleus
nTPM: 364.3
2220 Male, age 76, midline 364.3
Periaquaductal grey, anterior
nTPM: 397.4
2502 Female, age 75, unknown 415.8
1947 Male, age 18, unknown 401.2
1795 Male, age 51, unknown 375.0
Periaquaductal grey, dorsal
nTPM: 381.4
1840 Male, age 53, unknown 455.0
1831 Male, age 72, unknown 384.0
2464 Female, age 72, unknown 345.2
2850 Male, age 76, both hemispheres 341.6
Periaquaductal grey, lateral
nTPM: 336.0
2053 Male, age 18, unknown 377.8
2140 Male, age 76, both hemispheres 337.3
2272 Male, age 74, both hemispheres 293.0
Pretectal area
nTPM: 415.3
2007 Male, age 72, unknown 494.2
1816 Male, age 51, unknown 471.8
1817 Female, age 42, unknown 441.3
2667 Female, age 75, unknown 438.7
1944 Female, age 72, unknown 436.0
1815 Male, age 53, unknown 432.3
2316 Male, age 76, right hemisphere 409.1
2224 Female, age 72, unknown 389.0
2407 Male, age 75, both hemispheres 370.3
2825 Male, age 18, unknown 369.0
2273 Male, age 74, both hemispheres 316.2
Red nucleus
nTPM: 416.4
2503 Female, age 72, unknown 537.0
1821 Female, age 72, unknown 474.3
1865 Male, age 51, unknown 446.7
1904 Male, age 53, unknown 423.7
2227 Male, age 72, unknown 401.7
2785 Male, age 18, unknown 401.6
2588 Male, age 74, left hemisphere 398.2
1954 Female, age 42, unknown 398.1
2769 Male, age 72, unknown 396.6
2584 Male, age 75, left hemisphere 393.9
2725 Female, age 75, unknown 368.2
2823 Male, age 76, right hemisphere 356.7
Substantia nigra
nTPM: 501.6
1851 Male, age 51, unknown 675.1
2665 Male, age 74, both hemispheres 593.0
2409 Female, age 72, unknown 576.0
2699 Male, age 18, unknown 535.4
2241 Male, age 72, unknown 512.9
1916 Female, age 42, unknown 505.9
1889 Female, age 72, unknown 468.7
1941 Male, age 53, unknown 400.6
2590 Female, age 75, unknown 377.0
2583 Male, age 75, right hemisphere 371.1
Superior colliculus
nTPM: 420.8
2668 Female, age 75, unknown 549.9
2587 Male, age 74, left hemisphere 460.6
1913 Female, age 42, unknown 449.7
1796 Male, age 53, unknown 427.2
1995 Male, age 72, unknown 425.4
2087 Female, age 72, unknown 421.1
1895 Male, age 76, right hemisphere 387.1
2261 Male, age 18, unknown 383.8
1839 Male, age 51, unknown 355.5
2664 Male, age 75, both hemispheres 347.4
Ventral tegmental area
nTPM: 427.4
1915 Female, age 42, unknown 544.4
2223 Female, age 72, unknown 497.6
2021 Male, age 53, unknown 404.3
2410 Female, age 72, unknown 404.1
1942 Male, age 51, unknown 369.7
2218 Male, age 76, both hemispheres 344.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2484.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2484.1
Samples: 183

Max nTPM: 6635.1
Min nTPM: 994.3
Std nTPM: 888.0
Median nTPM: 2262.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 6635.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 6505.6
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 5244.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 4728.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 4674.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4380.6
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 4290.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 4288.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 4278.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 4149.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4037.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 89.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.6
FF:10158-103A5 76 years, female 89.6

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 499.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 499.5
Samples: 1

Max nTPM: 499.5
Min nTPM: 499.5
Sample A 499.5
Midbrain
nTPM: 451.8
Samples: 1

Max nTPM: 451.8
Min nTPM: 451.8
Sample A 451.8
Superior colliculi
nTPM: 340.3
Samples: 1

Max nTPM: 340.3
Min nTPM: 340.3
Sample A 340.3

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 2.2
Rat sample Sample description nTPM
Midbrain
nTPM: 2.2
Samples: 4

Max nTPM: 2.4
Min nTPM: 2.0
Sample A 2.3
Sample A 2.4
Sample A 2.0
Sample A 2.1

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