A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
226.1
nTPM
Monaco:
554.4
nTPM
Schmiedel:
260.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
226.1
HPA sample
nTPM
Classical monocyte nTPM: 98.9
Samples: 6
Max nTPM: 186.8
Min nTPM: 71.5
P10809_1003
186.8
P10809_1020
100.5
P10809_1039
77.0
P10809_1058
71.5
P10809_1080
81.5
P10809_1107
76.0
Intermediate monocyte nTPM: 179.3
Samples: 6
Max nTPM: 224.6
Min nTPM: 113.6
P10809_1004
224.6
P10809_1023
198.4
P10809_1042
199.4
P10809_1061
192.5
P10809_1081
113.6
P10809_1108
147.4
Non-classical monocyte nTPM: 226.1
Samples: 5
Max nTPM: 313.6
Min nTPM: 133.8
P10809_1005
276.9
P10809_1053
227.9
P10809_1072
313.6
P10809_1082
133.8
P10809_1109
178.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
554.4
Monaco sample
nTPM
Classical monocyte nTPM: 331.5
Samples: 4
Max nTPM: 372.4
Min nTPM: 273.0
RHH5313_R3680
335.1
RHH5221_R3593
372.4
RHH5250_R3622
345.6
RHH5279_R3651
273.0
Intermediate monocyte nTPM: 439.6
Samples: 4
Max nTPM: 538.3
Min nTPM: 381.4
RHH5314_R3681
381.4
RHH5222_R3594
538.3
RHH5251_R3623
451.8
RHH5280_R3652
386.8
Non-classical monocyte nTPM: 554.4
Samples: 4
Max nTPM: 607.0
Min nTPM: 489.4
RHH5315_R3682
547.1
RHH5223_R3595
607.0
RHH5252_R3624
574.1
RHH5281_R3653
489.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
260.5
Schmiedel sample id
TPM
Classical monocyte TPM: 139.7
Samples: 91
Max TPM: 166.2
Min TPM: 98.9
MONOCYTES_1
166.2
MONOCYTES_2
166.2
MONOCYTES_3
166.1
MONOCYTES_4
163.7
MONOCYTES_5
163.7
MONOCYTES_6
163.3
MONOCYTES_7
162.4
MONOCYTES_8
162.3
MONOCYTES_9
161.7
MONOCYTES_10
161.4
MONOCYTES_11
161.0
MONOCYTES_12
160.8
MONOCYTES_13
157.7
MONOCYTES_14
157.7
MONOCYTES_15
156.4
MONOCYTES_16
156.3
MONOCYTES_17
156.2
MONOCYTES_18
155.8
MONOCYTES_19
154.5
MONOCYTES_20
153.8
MONOCYTES_21
153.6
MONOCYTES_22
153.6
MONOCYTES_23
153.6
MONOCYTES_24
152.6
MONOCYTES_25
152.6
MONOCYTES_26
152.3
MONOCYTES_27
152.0
MONOCYTES_28
151.3
MONOCYTES_29
151.3
MONOCYTES_30
149.3
MONOCYTES_31
148.9
MONOCYTES_32
148.9
MONOCYTES_33
148.5
MONOCYTES_34
148.4
MONOCYTES_35
147.3
MONOCYTES_36
145.8
MONOCYTES_37
145.2
MONOCYTES_38
143.9
MONOCYTES_39
142.7
MONOCYTES_40
142.4
MONOCYTES_41
142.3
MONOCYTES_42
142.2
MONOCYTES_43
142.0
MONOCYTES_44
141.7
MONOCYTES_45
140.9
MONOCYTES_46
140.4
MONOCYTES_47
139.2
MONOCYTES_48
139.1
MONOCYTES_49
138.9
MONOCYTES_50
138.1
MONOCYTES_51
137.9
MONOCYTES_52
137.6
MONOCYTES_53
137.0
MONOCYTES_54
136.9
MONOCYTES_55
136.7
MONOCYTES_56
136.0
MONOCYTES_57
135.6
MONOCYTES_58
135.4
MONOCYTES_59
134.0
MONOCYTES_60
133.3
MONOCYTES_61
132.1
MONOCYTES_62
131.7
MONOCYTES_63
131.1
MONOCYTES_64
130.8
MONOCYTES_65
130.5
MONOCYTES_66
130.4
MONOCYTES_67
129.4
MONOCYTES_68
128.7
MONOCYTES_69
128.5
MONOCYTES_70
128.4
MONOCYTES_71
127.3
MONOCYTES_72
126.1
MONOCYTES_73
125.4
MONOCYTES_74
124.5
MONOCYTES_75
122.6
MONOCYTES_76
122.5
MONOCYTES_77
122.0
MONOCYTES_78
121.6
MONOCYTES_79
119.9
MONOCYTES_80
119.5
MONOCYTES_81
118.6
MONOCYTES_82
116.3
MONOCYTES_83
115.1
MONOCYTES_84
114.6
MONOCYTES_85
113.5
MONOCYTES_86
112.5
MONOCYTES_87
112.1
MONOCYTES_88
109.4
MONOCYTES_89
104.2
MONOCYTES_90
103.4
MONOCYTES_91
98.9
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Non-classical monocyte TPM: 260.5
Samples: 90
Max TPM: 341.6
Min TPM: 158.2
M2_1
341.6
M2_2
339.6
M2_3
317.1
M2_4
316.8
M2_5
315.4
M2_6
313.2
M2_7
308.8
M2_8
308.6
M2_9
307.5
M2_10
305.9
M2_11
304.8
M2_12
300.8
M2_13
299.7
M2_14
296.5
M2_15
295.7
M2_16
294.3
M2_17
294.1
M2_18
293.6
M2_19
293.5
M2_20
293.1
M2_21
293.0
M2_22
291.8
M2_23
290.5
M2_24
286.8
M2_25
285.1
M2_26
284.7
M2_27
283.6
M2_28
283.3
M2_29
283.3
M2_30
283.1
M2_31
283.0
M2_32
282.1
M2_33
280.4
M2_34
280.4
M2_35
279.5
M2_36
279.0
M2_37
276.7
M2_38
275.9
M2_39
274.7
M2_40
273.9
M2_41
273.3
M2_42
273.0
M2_43
272.3
M2_44
271.9
M2_45
271.6
M2_46
271.1
M2_47
270.9
M2_48
269.8
M2_49
269.6
M2_50
267.6
M2_51
267.4
M2_52
264.0
M2_53
261.5
M2_54
259.3
M2_55
259.2
M2_56
256.7
M2_57
256.3
M2_58
253.6
M2_59
253.6
M2_60
246.9
M2_61
245.5
M2_62
239.6
M2_63
235.5
M2_64
235.4
M2_65
234.9
M2_66
234.4
M2_67
232.0
M2_68
227.1
M2_69
224.8
M2_70
223.8
M2_71
222.5
M2_72
221.9
M2_73
219.8
M2_74
218.8
M2_75
216.6
M2_76
212.0
M2_77
210.9
M2_78
210.5
M2_79
210.0
M2_80
206.7
M2_81
206.1
M2_82
204.5
M2_83
200.7
M2_84
195.1
M2_85
193.8
M2_86
188.3
M2_87
186.1
M2_88
184.6
M2_89
163.2
M2_90
158.2
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