A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.7
nTPM
Monaco:
48.7
nTPM
Schmiedel:
59.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.7
HPA sample
nTPM
Classical monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.4
P10809_1003
1.1
P10809_1020
0.4
P10809_1039
1.0
P10809_1058
0.6
P10809_1080
1.4
P10809_1107
0.5
Intermediate monocyte nTPM: 2.0
Samples: 6
Max nTPM: 4.0
Min nTPM: 0.6
P10809_1004
4.0
P10809_1023
1.0
P10809_1042
3.2
P10809_1061
0.6
P10809_1081
2.3
P10809_1108
1.1
Non-classical monocyte nTPM: 2.7
Samples: 5
Max nTPM: 5.3
Min nTPM: 0.0
P10809_1005
5.3
P10809_1053
3.7
P10809_1072
0.0
P10809_1082
2.5
P10809_1109
1.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.7
Monaco sample
nTPM
Classical monocyte nTPM: 15.5
Samples: 4
Max nTPM: 27.1
Min nTPM: 5.4
RHH5313_R3680
16.5
RHH5221_R3593
12.8
RHH5250_R3622
5.4
RHH5279_R3651
27.1
Intermediate monocyte nTPM: 34.9
Samples: 4
Max nTPM: 47.1
Min nTPM: 23.0
RHH5314_R3681
47.1
RHH5222_R3594
34.0
RHH5251_R3623
23.0
RHH5280_R3652
35.4
Non-classical monocyte nTPM: 48.7
Samples: 4
Max nTPM: 75.6
Min nTPM: 31.9
RHH5315_R3682
75.6
RHH5223_R3595
46.0
RHH5252_R3624
31.9
RHH5281_R3653
41.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.6
Schmiedel sample id
TPM
Classical monocyte TPM: 27.1
Samples: 91
Max TPM: 71.2
Min TPM: 4.8
MONOCYTES_1
71.2
MONOCYTES_2
69.9
MONOCYTES_3
64.3
MONOCYTES_4
60.2
MONOCYTES_5
56.7
MONOCYTES_6
53.8
MONOCYTES_7
51.7
MONOCYTES_8
48.0
MONOCYTES_9
47.6
MONOCYTES_10
44.3
MONOCYTES_11
43.9
MONOCYTES_12
41.9
MONOCYTES_13
41.1
MONOCYTES_14
40.8
MONOCYTES_15
40.8
MONOCYTES_16
38.8
MONOCYTES_17
38.6
MONOCYTES_18
37.9
MONOCYTES_19
37.5
MONOCYTES_20
36.8
MONOCYTES_21
36.3
MONOCYTES_22
35.0
MONOCYTES_23
34.9
MONOCYTES_24
34.9
MONOCYTES_25
34.9
MONOCYTES_26
34.6
MONOCYTES_27
34.4
MONOCYTES_28
34.3
MONOCYTES_29
33.3
MONOCYTES_30
32.4
MONOCYTES_31
31.9
MONOCYTES_32
31.6
MONOCYTES_33
31.2
MONOCYTES_34
31.0
MONOCYTES_35
30.0
MONOCYTES_36
29.6
MONOCYTES_37
29.1
MONOCYTES_38
29.0
MONOCYTES_39
28.9
MONOCYTES_40
28.6
MONOCYTES_41
27.7
MONOCYTES_42
27.7
MONOCYTES_43
27.1
MONOCYTES_44
26.5
MONOCYTES_45
25.7
MONOCYTES_46
25.5
MONOCYTES_47
25.0
MONOCYTES_48
24.4
MONOCYTES_49
24.3
MONOCYTES_50
24.3
MONOCYTES_51
24.3
MONOCYTES_52
24.1
MONOCYTES_53
23.8
MONOCYTES_54
21.7
MONOCYTES_55
21.1
MONOCYTES_56
20.1
MONOCYTES_57
20.1
MONOCYTES_58
19.7
MONOCYTES_59
19.1
MONOCYTES_60
17.8
MONOCYTES_61
17.8
MONOCYTES_62
17.3
MONOCYTES_63
17.2
MONOCYTES_64
17.0
MONOCYTES_65
16.7
MONOCYTES_66
15.3
MONOCYTES_67
14.7
MONOCYTES_68
14.7
MONOCYTES_69
14.3
MONOCYTES_70
14.2
MONOCYTES_71
13.8
MONOCYTES_72
13.0
MONOCYTES_73
12.8
MONOCYTES_74
12.7
MONOCYTES_75
11.9
MONOCYTES_76
11.6
MONOCYTES_77
11.6
MONOCYTES_78
11.6
MONOCYTES_79
11.5
MONOCYTES_80
11.4
MONOCYTES_81
10.9
MONOCYTES_82
10.6
MONOCYTES_83
10.4
MONOCYTES_84
9.9
MONOCYTES_85
9.5
MONOCYTES_86
9.0
MONOCYTES_87
8.9
MONOCYTES_88
8.7
MONOCYTES_89
8.1
MONOCYTES_90
8.1
MONOCYTES_91
4.8
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Non-classical monocyte TPM: 59.6
Samples: 90
Max TPM: 142.8
Min TPM: 16.9
M2_1
142.8
M2_2
131.4
M2_3
126.4
M2_4
109.6
M2_5
109.6
M2_6
101.8
M2_7
100.8
M2_8
96.9
M2_9
95.1
M2_10
95.1
M2_11
94.7
M2_12
94.0
M2_13
92.3
M2_14
91.9
M2_15
88.8
M2_16
87.4
M2_17
86.5
M2_18
84.9
M2_19
84.6
M2_20
78.9
M2_21
78.3
M2_22
77.2
M2_23
76.9
M2_24
76.1
M2_25
74.7
M2_26
74.4
M2_27
74.1
M2_28
74.0
M2_29
72.0
M2_30
71.8
M2_31
69.4
M2_32
69.1
M2_33
68.8
M2_34
67.3
M2_35
66.3
M2_36
65.5
M2_37
64.9
M2_38
63.4
M2_39
63.1
M2_40
62.6
M2_41
61.8
M2_42
61.2
M2_43
57.1
M2_44
56.5
M2_45
55.4
M2_46
54.2
M2_47
54.2
M2_48
53.1
M2_49
52.7
M2_50
51.5
M2_51
51.3
M2_52
46.3
M2_53
45.2
M2_54
44.5
M2_55
44.5
M2_56
44.4
M2_57
44.4
M2_58
43.6
M2_59
43.0
M2_60
42.7
M2_61
42.3
M2_62
42.0
M2_63
41.6
M2_64
40.9
M2_65
40.2
M2_66
40.1
M2_67
39.4
M2_68
37.7
M2_69
36.6
M2_70
36.3
M2_71
36.0
M2_72
34.5
M2_73
34.2
M2_74
33.7
M2_75
33.5
M2_76
32.7
M2_77
32.5
M2_78
31.1
M2_79
31.0
M2_80
29.2
M2_81
28.3
M2_82
26.6
M2_83
25.7
M2_84
25.2
M2_85
24.6
M2_86
22.1
M2_87
21.4
M2_88
20.9
M2_89
20.1
M2_90
16.9
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