MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.6 nTPM
HPA Brain:37.2 nTPM
GTEx:31.6 nTPM
FANTOM5:60.7 Scaled Tags Per Million
Pig:35.3 nTPM
Mouse:17.6 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 37.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.4
2411 Female, age 72, unknown 37.9
2019 Male, age 18, unknown 36.2
1827 Male, age 72, unknown 36.0
2219 Male, age 76, both hemispheres 33.9
1833 Male, age 53, unknown 33.6
1870 Female, age 42, unknown 33.6
1830 Male, age 51, unknown 33.1
2666 Male, age 74, left hemisphere 32.8
2828 Female, age 72, unknown 30.3
2586 Male, age 75, left hemisphere 26.5
Dorsal raphe nucleus
nTPM: 33.3
2298 Female, age 72, unknown 35.5
2750 Male, age 76, both hemispheres 33.9
2047 Male, age 72, unknown 33.8
1828 Male, age 53, unknown 33.3
2016 Female, age 72, unknown 29.7
Inferior colliculus
nTPM: 31.3
2849 Male, age 72, unknown 33.4
1890 Male, age 53, unknown 31.1
2097 Female, age 72, unknown 30.7
1848 Female, age 42, unknown 30.0
Median raphe nucleus
nTPM: 37.2
2220 Male, age 76, midline 37.2
Periaquaductal grey, anterior
nTPM: 32.0
1947 Male, age 18, unknown 32.9
2502 Female, age 75, unknown 31.9
1795 Male, age 51, unknown 31.3
Periaquaductal grey, dorsal
nTPM: 31.1
2850 Male, age 76, both hemispheres 36.2
1840 Male, age 53, unknown 30.1
2464 Female, age 72, unknown 29.5
1831 Male, age 72, unknown 28.5
Periaquaductal grey, lateral
nTPM: 31.8
2272 Male, age 74, both hemispheres 34.3
2140 Male, age 76, both hemispheres 32.3
2053 Male, age 18, unknown 28.8
Pretectal area
nTPM: 33.9
1817 Female, age 42, unknown 37.2
2007 Male, age 72, unknown 37.0
1815 Male, age 53, unknown 35.5
2667 Female, age 75, unknown 34.8
2273 Male, age 74, both hemispheres 34.5
1816 Male, age 51, unknown 34.2
2316 Male, age 76, right hemisphere 33.7
2224 Female, age 72, unknown 32.7
1944 Female, age 72, unknown 32.4
2825 Male, age 18, unknown 31.3
2407 Male, age 75, both hemispheres 29.5
Red nucleus
nTPM: 35.1
2725 Female, age 75, unknown 38.7
1821 Female, age 72, unknown 38.0
1865 Male, age 51, unknown 36.9
2823 Male, age 76, right hemisphere 36.6
2785 Male, age 18, unknown 36.1
1904 Male, age 53, unknown 35.8
2769 Male, age 72, unknown 34.9
2227 Male, age 72, unknown 34.4
1954 Female, age 42, unknown 33.9
2503 Female, age 72, unknown 32.5
2584 Male, age 75, left hemisphere 32.4
2588 Male, age 74, left hemisphere 31.0
Substantia nigra
nTPM: 33.5
2409 Female, age 72, unknown 40.1
1916 Female, age 42, unknown 38.8
1851 Male, age 51, unknown 36.4
1941 Male, age 53, unknown 34.3
2699 Male, age 18, unknown 34.3
1889 Female, age 72, unknown 33.2
2583 Male, age 75, right hemisphere 30.0
2665 Male, age 74, both hemispheres 29.7
2590 Female, age 75, unknown 29.1
2241 Male, age 72, unknown 28.9
Superior colliculus
nTPM: 31.9
2587 Male, age 74, left hemisphere 36.0
1895 Male, age 76, right hemisphere 33.8
1913 Female, age 42, unknown 33.6
2087 Female, age 72, unknown 32.1
2668 Female, age 75, unknown 32.1
2261 Male, age 18, unknown 31.8
1995 Male, age 72, unknown 31.5
1796 Male, age 53, unknown 30.9
1839 Male, age 51, unknown 30.5
2664 Male, age 75, both hemispheres 26.4
Ventral tegmental area
nTPM: 33.3
1915 Female, age 42, unknown 36.1
2410 Female, age 72, unknown 35.0
2223 Female, age 72, unknown 33.9
2218 Male, age 76, both hemispheres 32.6
2021 Male, age 53, unknown 31.5
1942 Male, age 51, unknown 30.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.6
Samples: 183

Max nTPM: 51.7
Min nTPM: 16.9
Std nTPM: 5.5
Median nTPM: 31.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 51.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 51.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 49.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 48.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 46.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 44.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 42.4
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 41.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 40.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 39.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.7
FF:10158-103A5 76 years, female 60.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.3
Samples: 4

Max nTPM: 46.3
Min nTPM: 29.3
Sample A Female 46.3
Sample B Female 29.3
Sample C Male 34.9
Sample D Male 30.6
Midbrain
nTPM: 32.2
Samples: 4

Max nTPM: 51.0
Min nTPM: 21.3
Sample A Female 51.0
Sample B Female 29.5
Sample C Male 26.8
Sample D Male 21.3
Periaqueductal gray
nTPM: 26.9
Samples: 3

Max nTPM: 29.5
Min nTPM: 24.5
Sample B Female 26.8
Sample C Male 29.5
Sample D Male 24.5
Superior colliculi
nTPM: 31.4
Samples: 4

Max nTPM: 37.1
Min nTPM: 26.8
Sample A Female 37.1
Sample B Female 32.5
Sample C Male 29.0
Sample D Male 26.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.7
Samples: 4

Max nTPM: 20.1
Min nTPM: 15.5
Sample A Male 20.1
Sample B Male 15.5
Sample C Female 15.9
Sample D Female 19.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
70194964 Antisense, RP_050517_02_B03, Mouse strain C57BL/6J (56 days, male) 1.8

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