A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
314.1
nTPM
Monaco:
453.6
nTPM
Schmiedel:
132.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
314.1
HPA sample
nTPM
Classical monocyte nTPM: 295.6
Samples: 6
Max nTPM: 370.3
Min nTPM: 235.1
P10809_1003
289.9
P10809_1020
329.1
P10809_1039
370.3
P10809_1058
235.1
P10809_1080
295.1
P10809_1107
253.9
Intermediate monocyte nTPM: 314.1
Samples: 6
Max nTPM: 397.3
Min nTPM: 246.6
P10809_1004
248.9
P10809_1023
323.6
P10809_1042
393.9
P10809_1061
397.3
P10809_1081
246.6
P10809_1108
274.0
Non-classical monocyte nTPM: 256.9
Samples: 5
Max nTPM: 336.4
Min nTPM: 198.6
P10809_1005
224.3
P10809_1053
273.0
P10809_1072
336.4
P10809_1082
198.6
P10809_1109
252.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
453.6
Monaco sample
nTPM
Classical monocyte nTPM: 453.6
Samples: 4
Max nTPM: 506.8
Min nTPM: 390.3
RHH5313_R3680
462.2
RHH5221_R3593
506.8
RHH5250_R3622
455.0
RHH5279_R3651
390.3
Intermediate monocyte nTPM: 350.1
Samples: 4
Max nTPM: 392.5
Min nTPM: 320.1
RHH5314_R3681
332.5
RHH5222_R3594
392.5
RHH5251_R3623
320.1
RHH5280_R3652
355.4
Non-classical monocyte nTPM: 332.2
Samples: 4
Max nTPM: 352.5
Min nTPM: 323.1
RHH5315_R3682
352.5
RHH5223_R3595
324.0
RHH5252_R3624
323.1
RHH5281_R3653
329.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
132.0
Schmiedel sample id
TPM
Classical monocyte TPM: 132.0
Samples: 91
Max TPM: 164.4
Min TPM: 92.7
MONOCYTES_1
164.4
MONOCYTES_2
163.1
MONOCYTES_3
157.5
MONOCYTES_4
156.5
MONOCYTES_5
156.2
MONOCYTES_6
155.3
MONOCYTES_7
154.6
MONOCYTES_8
154.5
MONOCYTES_9
151.9
MONOCYTES_10
150.6
MONOCYTES_11
150.3
MONOCYTES_12
150.1
MONOCYTES_13
150.1
MONOCYTES_14
148.8
MONOCYTES_15
148.4
MONOCYTES_16
148.2
MONOCYTES_17
147.9
MONOCYTES_18
147.0
MONOCYTES_19
147.0
MONOCYTES_20
146.4
MONOCYTES_21
145.5
MONOCYTES_22
145.1
MONOCYTES_23
144.8
MONOCYTES_24
144.1
MONOCYTES_25
143.7
MONOCYTES_26
142.7
MONOCYTES_27
142.2
MONOCYTES_28
141.0
MONOCYTES_29
140.4
MONOCYTES_30
140.3
MONOCYTES_31
139.4
MONOCYTES_32
139.3
MONOCYTES_33
137.8
MONOCYTES_34
137.6
MONOCYTES_35
136.6
MONOCYTES_36
136.0
MONOCYTES_37
135.8
MONOCYTES_38
135.5
MONOCYTES_39
135.4
MONOCYTES_40
135.0
MONOCYTES_41
134.6
MONOCYTES_42
134.3
MONOCYTES_43
134.3
MONOCYTES_44
134.2
MONOCYTES_45
133.7
MONOCYTES_46
132.9
MONOCYTES_47
132.3
MONOCYTES_48
131.9
MONOCYTES_49
131.8
MONOCYTES_50
131.8
MONOCYTES_51
131.6
MONOCYTES_52
131.6
MONOCYTES_53
131.2
MONOCYTES_54
131.1
MONOCYTES_55
131.1
MONOCYTES_56
130.7
MONOCYTES_57
130.0
MONOCYTES_58
129.8
MONOCYTES_59
129.5
MONOCYTES_60
129.3
MONOCYTES_61
129.2
MONOCYTES_62
128.9
MONOCYTES_63
127.4
MONOCYTES_64
126.8
MONOCYTES_65
125.3
MONOCYTES_66
125.2
MONOCYTES_67
122.7
MONOCYTES_68
120.5
MONOCYTES_69
120.3
MONOCYTES_70
119.6
MONOCYTES_71
119.6
MONOCYTES_72
119.5
MONOCYTES_73
117.7
MONOCYTES_74
117.4
MONOCYTES_75
117.4
MONOCYTES_76
116.6
MONOCYTES_77
113.0
MONOCYTES_78
111.2
MONOCYTES_79
110.7
MONOCYTES_80
109.9
MONOCYTES_81
109.1
MONOCYTES_82
108.7
MONOCYTES_83
108.2
MONOCYTES_84
106.9
MONOCYTES_85
104.9
MONOCYTES_86
102.7
MONOCYTES_87
102.4
MONOCYTES_88
100.6
MONOCYTES_89
97.6
MONOCYTES_90
95.7
MONOCYTES_91
92.7
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Non-classical monocyte TPM: 108.8
Samples: 90
Max TPM: 138.5
Min TPM: 66.7
M2_1
138.5
M2_2
138.0
M2_3
137.2
M2_4
137.1
M2_5
136.8
M2_6
136.4
M2_7
135.0
M2_8
132.8
M2_9
131.1
M2_10
131.0
M2_11
130.2
M2_12
130.0
M2_13
129.3
M2_14
127.2
M2_15
126.8
M2_16
125.7
M2_17
124.1
M2_18
123.2
M2_19
122.9
M2_20
122.5
M2_21
122.2
M2_22
121.2
M2_23
120.4
M2_24
120.4
M2_25
119.6
M2_26
119.6
M2_27
119.5
M2_28
119.4
M2_29
118.4
M2_30
117.7
M2_31
117.3
M2_32
116.4
M2_33
116.4
M2_34
115.6
M2_35
115.6
M2_36
115.4
M2_37
114.6
M2_38
114.3
M2_39
114.3
M2_40
114.0
M2_41
113.9
M2_42
113.7
M2_43
113.2
M2_44
113.0
M2_45
112.9
M2_46
112.8
M2_47
112.4
M2_48
111.8
M2_49
111.3
M2_50
111.0
M2_51
110.0
M2_52
107.9
M2_53
107.7
M2_54
107.3
M2_55
106.6
M2_56
106.5
M2_57
104.5
M2_58
103.4
M2_59
102.2
M2_60
102.0
M2_61
101.9
M2_62
100.6
M2_63
98.0
M2_64
98.0
M2_65
97.8
M2_66
97.8
M2_67
97.1
M2_68
96.9
M2_69
96.7
M2_70
96.1
M2_71
94.5
M2_72
92.6
M2_73
92.0
M2_74
91.5
M2_75
90.5
M2_76
90.4
M2_77
86.0
M2_78
85.1
M2_79
84.5
M2_80
83.8
M2_81
83.7
M2_82
82.8
M2_83
82.0
M2_84
81.4
M2_85
80.7
M2_86
77.4
M2_87
74.9
M2_88
69.9
M2_89
67.5
M2_90
66.7
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