A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.8
nTPM
Monaco:
37.4
nTPM
Schmiedel:
10.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.8
HPA sample
nTPM
Memory B-cell nTPM: 6.1
Samples: 6
Max nTPM: 12.1
Min nTPM: 0.1
P10809_1017
8.0
P10809_1025
3.7
P10809_1044
0.1
P10809_1063
5.9
P10809_1092
6.7
P10809_1105
12.1
Naive B-cell nTPM: 8.8
Samples: 6
Max nTPM: 11.2
Min nTPM: 4.3
P10809_1011
10.5
P10809_1029
8.5
P10809_1048
10.8
P10809_1067
4.3
P10809_1091
7.4
P10809_1104
11.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 23.4
Samples: 4
Max nTPM: 30.6
Min nTPM: 14.5
RHH5310_R3677
24.3
RHH5218_R3590
24.0
RHH5247_R3619
30.6
RHH5276_R3648
14.5
Naive B-cell nTPM: 20.4
Samples: 4
Max nTPM: 24.7
Min nTPM: 9.6
RHH5308_R3675
23.0
RHH5216_R3588
24.7
RHH5245_R3617
9.6
RHH5274_R3646
24.1
Non-switched memory B-cell nTPM: 21.5
Samples: 4
Max nTPM: 29.9
Min nTPM: 13.9
RHH5309_R3676
13.9
RHH5217_R3589
29.9
RHH5246_R3618
26.3
RHH5275_R3647
16.1
Plasmablast nTPM: 37.4
Samples: 4
Max nTPM: 51.7
Min nTPM: 20.0
RHH5312_R3679
51.7
RHH5220_R3592
36.6
RHH5249_R3621
41.3
RHH5278_R3650
20.0
Switched memory B-cell nTPM: 22.2
Samples: 4
Max nTPM: 31.3
Min nTPM: 14.0
RHH5311_R3678
26.2
RHH5219_R3591
31.3
RHH5248_R3620
17.3
RHH5277_R3649
14.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.6
Schmiedel sample id
TPM
Naive B-cell TPM: 10.6
Samples: 91
Max TPM: 17.3
Min TPM: 2.6
B_CELL_NAIVE_1
17.3
B_CELL_NAIVE_2
17.0
B_CELL_NAIVE_3
16.8
B_CELL_NAIVE_4
16.6
B_CELL_NAIVE_5
15.5
B_CELL_NAIVE_6
15.2
B_CELL_NAIVE_7
15.1
B_CELL_NAIVE_8
15.0
B_CELL_NAIVE_9
15.0
B_CELL_NAIVE_10
14.9
B_CELL_NAIVE_11
14.9
B_CELL_NAIVE_12
14.6
B_CELL_NAIVE_13
14.5
B_CELL_NAIVE_14
14.5
B_CELL_NAIVE_15
14.0
B_CELL_NAIVE_16
14.0
B_CELL_NAIVE_17
13.9
B_CELL_NAIVE_18
13.9
B_CELL_NAIVE_19
13.8
B_CELL_NAIVE_20
13.6
B_CELL_NAIVE_21
13.6
B_CELL_NAIVE_22
13.4
B_CELL_NAIVE_23
13.3
B_CELL_NAIVE_24
13.1
B_CELL_NAIVE_25
13.1
B_CELL_NAIVE_26
13.0
B_CELL_NAIVE_27
13.0
B_CELL_NAIVE_28
12.8
B_CELL_NAIVE_29
12.5
B_CELL_NAIVE_30
12.5
B_CELL_NAIVE_31
12.4
B_CELL_NAIVE_32
12.4
B_CELL_NAIVE_33
12.4
B_CELL_NAIVE_34
12.3
B_CELL_NAIVE_35
12.0
B_CELL_NAIVE_36
11.9
B_CELL_NAIVE_37
11.9
B_CELL_NAIVE_38
11.7
B_CELL_NAIVE_39
11.6
B_CELL_NAIVE_40
11.6
B_CELL_NAIVE_41
11.6
B_CELL_NAIVE_42
11.4
B_CELL_NAIVE_43
11.3
B_CELL_NAIVE_44
11.2
B_CELL_NAIVE_45
11.1
B_CELL_NAIVE_46
11.1
B_CELL_NAIVE_47
10.9
B_CELL_NAIVE_48
10.7
B_CELL_NAIVE_49
10.6
B_CELL_NAIVE_50
10.4
B_CELL_NAIVE_51
10.4
B_CELL_NAIVE_52
10.3
B_CELL_NAIVE_53
10.3
B_CELL_NAIVE_54
10.3
B_CELL_NAIVE_55
10.2
B_CELL_NAIVE_56
10.1
B_CELL_NAIVE_57
10.0
B_CELL_NAIVE_58
9.7
B_CELL_NAIVE_59
9.4
B_CELL_NAIVE_60
9.3
B_CELL_NAIVE_61
9.3
B_CELL_NAIVE_62
9.2
B_CELL_NAIVE_63
9.2
B_CELL_NAIVE_64
9.1
B_CELL_NAIVE_65
9.0
B_CELL_NAIVE_66
8.9
B_CELL_NAIVE_67
8.9
B_CELL_NAIVE_68
8.8
B_CELL_NAIVE_69
8.7
B_CELL_NAIVE_70
8.3
B_CELL_NAIVE_71
8.0
B_CELL_NAIVE_72
7.5
B_CELL_NAIVE_73
7.3
B_CELL_NAIVE_74
7.3
B_CELL_NAIVE_75
7.1
B_CELL_NAIVE_76
7.1
B_CELL_NAIVE_77
6.4
B_CELL_NAIVE_78
6.4
B_CELL_NAIVE_79
6.3
B_CELL_NAIVE_80
6.1
B_CELL_NAIVE_81
5.7
B_CELL_NAIVE_82
5.5
B_CELL_NAIVE_83
5.0
B_CELL_NAIVE_84
4.8
B_CELL_NAIVE_85
4.4
B_CELL_NAIVE_86
4.2
B_CELL_NAIVE_87
4.1
B_CELL_NAIVE_88
4.0
B_CELL_NAIVE_89
3.9
B_CELL_NAIVE_90
3.6
B_CELL_NAIVE_91
2.6
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