MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.3 nTPM
HPA Brain:144.1 nTPM
GTEx:45.3 nTPM
FANTOM5:1.5 Scaled Tags Per Million
Pig:39.6 nTPM
Mouse:57.7 nTPM
Allen mouse:2.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 144.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.4
2219 Male, age 76, both hemispheres 152.4
1833 Male, age 53, unknown 145.0
1830 Male, age 51, unknown 144.8
2586 Male, age 75, left hemisphere 127.8
2411 Female, age 72, unknown 127.6
2019 Male, age 18, unknown 124.2
2828 Female, age 72, unknown 123.7
1870 Female, age 42, unknown 117.4
2666 Male, age 74, left hemisphere 108.5
1827 Male, age 72, unknown 103.1
Dorsal raphe nucleus
nTPM: 99.4
2750 Male, age 76, both hemispheres 132.1
2016 Female, age 72, unknown 100.6
1828 Male, age 53, unknown 97.9
2047 Male, age 72, unknown 88.2
2298 Female, age 72, unknown 78.2
Inferior colliculus
nTPM: 95.1
1890 Male, age 53, unknown 101.6
2849 Male, age 72, unknown 99.6
1848 Female, age 42, unknown 97.4
2097 Female, age 72, unknown 81.8
Median raphe nucleus
nTPM: 99.0
2220 Male, age 76, midline 99.0
Periaquaductal grey, anterior
nTPM: 107.2
2502 Female, age 75, unknown 124.8
1947 Male, age 18, unknown 98.6
1795 Male, age 51, unknown 98.2
Periaquaductal grey, dorsal
nTPM: 93.7
2464 Female, age 72, unknown 108.7
2850 Male, age 76, both hemispheres 93.8
1831 Male, age 72, unknown 91.9
1840 Male, age 53, unknown 80.3
Periaquaductal grey, lateral
nTPM: 107.4
2272 Male, age 74, both hemispheres 109.7
2140 Male, age 76, both hemispheres 108.1
2053 Male, age 18, unknown 104.5
Pretectal area
nTPM: 108.7
2316 Male, age 76, right hemisphere 132.3
2667 Female, age 75, unknown 128.8
2407 Male, age 75, both hemispheres 122.2
1815 Male, age 53, unknown 121.3
1817 Female, age 42, unknown 107.3
2825 Male, age 18, unknown 105.9
2007 Male, age 72, unknown 104.7
2224 Female, age 72, unknown 100.3
2273 Male, age 74, both hemispheres 92.8
1944 Female, age 72, unknown 91.3
1816 Male, age 51, unknown 89.4
Red nucleus
nTPM: 144.1
1904 Male, age 53, unknown 171.0
1865 Male, age 51, unknown 169.4
2823 Male, age 76, right hemisphere 163.6
2769 Male, age 72, unknown 160.4
2227 Male, age 72, unknown 154.1
2588 Male, age 74, left hemisphere 151.7
2785 Male, age 18, unknown 141.0
2503 Female, age 72, unknown 136.9
1954 Female, age 42, unknown 129.6
2584 Male, age 75, left hemisphere 127.9
1821 Female, age 72, unknown 120.0
2725 Female, age 75, unknown 104.0
Substantia nigra
nTPM: 107.2
2699 Male, age 18, unknown 142.6
2665 Male, age 74, both hemispheres 121.4
2583 Male, age 75, right hemisphere 119.3
1851 Male, age 51, unknown 110.3
1889 Female, age 72, unknown 103.1
2590 Female, age 75, unknown 102.3
2409 Female, age 72, unknown 99.3
2241 Male, age 72, unknown 95.0
1941 Male, age 53, unknown 92.6
1916 Female, age 42, unknown 86.3
Superior colliculus
nTPM: 118.1
1913 Female, age 42, unknown 148.6
1995 Male, age 72, unknown 145.4
1895 Male, age 76, right hemisphere 121.4
2587 Male, age 74, left hemisphere 120.0
2668 Female, age 75, unknown 119.0
2664 Male, age 75, both hemispheres 118.3
1839 Male, age 51, unknown 108.5
2261 Male, age 18, unknown 101.4
1796 Male, age 53, unknown 101.1
2087 Female, age 72, unknown 97.8
Ventral tegmental area
nTPM: 109.8
2223 Female, age 72, unknown 125.3
2410 Female, age 72, unknown 119.3
2218 Male, age 76, both hemispheres 109.8
1942 Male, age 51, unknown 109.1
2021 Male, age 53, unknown 101.4
1915 Female, age 42, unknown 93.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 45.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.3
Samples: 183

Max nTPM: 109.8
Min nTPM: 16.1
Std nTPM: 14.8
Median nTPM: 42.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 109.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 87.4
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 86.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 77.4
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 75.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 73.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 72.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 72.0
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 71.2
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 71.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 70.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.5
FF:10158-103A5 76 years, female 1.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 39.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.3
Samples: 4

Max nTPM: 42.8
Min nTPM: 28.6
Sample A Female 42.8
Sample B Female 28.6
Sample C Male 31.6
Sample D Male 38.2
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 62.2
Min nTPM: 29.5
Sample A Female 62.2
Sample B Female 31.5
Sample C Male 35.4
Sample D Male 29.5
Periaqueductal gray
nTPM: 26.3
Samples: 3

Max nTPM: 30.7
Min nTPM: 23.1
Sample B Female 30.7
Sample C Male 25.2
Sample D Male 23.1
Superior colliculi
nTPM: 33.3
Samples: 4

Max nTPM: 41.8
Min nTPM: 26.5
Sample A Female 41.8
Sample B Female 26.5
Sample C Male 31.1
Sample D Male 33.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 57.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.7
Samples: 4

Max nTPM: 60.7
Min nTPM: 54.4
Sample A Male 59.2
Sample B Male 56.4
Sample C Female 54.4
Sample D Female 60.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
68632002 Antisense, RP_050125_01_E06, Mouse strain C57BL/6J (56 days, male) 2.9

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