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  • EPN2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:51.5 nTPM
HPA Brain:109.3 nTPM
GTEx:51.5 nTPM
FANTOM5:1.0 Scaled Tags Per Million
Pig:39.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 101.3
2816 Male, age 47, midline 111.7
2194 Female, age 79, both hemispheres 106.4
2565 Male, age 75, midline 106.4
1981 Female, age 72, midline 92.8
2048 Male, age 55, midline 89.2
Cervical spinal cord, dorsal horn
nTPM: 109.3
2296 Male, age 66, both hemispheres 140.1
2173 Female, age 72, unknown 113.9
2721 Male, age 90, both hemispheres 108.7
1877 Male, age 55, unknown 103.3
2069 Male, age 47, both hemispheres 101.1
2297 Male, age 75, both hemispheres 88.9
Cervical spinal cord, ventral horn
nTPM: 106.4
2820 Female, age 79, both hemispheres 127.6
2068 Male, age 55, unknown 122.6
2480 Male, age 75, both hemispheres 102.9
2295 Male, age 66, both hemispheres 99.7
2098 Female, age 72, unknown 94.4
2809 Male, age 90, both hemispheres 91.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 51.5
Samples: 204

Max nTPM: 91.1
Min nTPM: 22.0
Std nTPM: 13.9
Median nTPM: 52.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 91.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 86.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 82.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 78.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 77.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 77.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 77.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 75.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 74.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 73.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 73.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 72.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 72.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 71.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 71.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 70.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 70.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 69.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 69.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 68.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 68.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 67.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 67.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 67.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 67.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 67.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 66.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 66.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 66.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 66.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 65.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 65.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 65.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 65.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 65.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 65.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 64.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 64.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 64.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 64.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 64.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 63.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 63.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 63.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 63.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 63.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 63.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 62.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 62.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 62.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 62.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 62.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 61.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 61.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 61.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 61.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 60.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 60.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 59.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 59.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 59.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 58.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 58.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 58.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 58.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 58.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 58.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 58.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 58.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 58.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 57.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 57.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 57.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 57.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 57.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 57.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 57.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 56.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 56.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 56.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 56.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 56.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 56.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 56.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 56.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 56.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 55.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 55.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 55.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 55.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 55.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 55.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 54.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 54.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 54.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 54.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 54.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 54.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 54.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 53.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 53.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 53.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 52.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 52.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 52.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 52.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 52.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 51.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 51.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 51.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 51.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 49.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 49.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 49.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 49.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 49.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 48.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 48.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 48.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 48.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 48.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 47.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 47.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 47.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 47.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 47.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 46.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 46.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 46.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 46.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 45.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 45.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 45.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 45.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 44.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 44.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 44.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 44.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 44.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 44.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 44.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 43.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 43.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 43.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 43.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 42.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 42.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 41.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 41.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 41.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 41.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 40.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 40.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 40.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 39.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 39.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 39.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 39.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 38.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 38.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 38.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 37.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 37.6
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 37.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 37.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 36.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 36.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 36.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 36.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 36.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 36.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 35.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 35.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 35.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 35.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 35.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 35.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 34.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 34.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 34.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 33.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 33.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 33.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 32.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 32.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 32.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 32.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 30.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 29.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 29.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 29.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 29.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 28.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 28.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 28.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 28.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 27.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 26.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 26.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 25.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 24.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 23.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 23.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 22.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1.0
FF:10181-103D1 60 years, female 2.0
FF:10159-103A6 76 years, female 0.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 34.6
Samples: 4

Max nTPM: 44.7
Min nTPM: 29.3
Sample A Female 44.7
Sample B Female 30.8
Sample C Male 29.3
Sample D Male 33.5
Ventral spinal cord
nTPM: 39.3
Samples: 4

Max nTPM: 49.2
Min nTPM: 32.5
Sample A Female 49.2
Sample B Female 37.6
Sample C Male 32.5
Sample D Male 37.9

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