A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
38.5
nTPM
Monaco:
232.1
nTPM
Schmiedel:
69.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.5
HPA sample
nTPM
Classical monocyte nTPM: 38.5
Samples: 6
Max nTPM: 50.6
Min nTPM: 29.0
P10809_1003
50.6
P10809_1020
36.8
P10809_1039
32.0
P10809_1058
29.0
P10809_1080
35.6
P10809_1107
47.0
Intermediate monocyte nTPM: 27.1
Samples: 6
Max nTPM: 42.8
Min nTPM: 17.4
P10809_1004
24.0
P10809_1023
26.2
P10809_1042
22.8
P10809_1061
29.4
P10809_1081
17.4
P10809_1108
42.8
Non-classical monocyte nTPM: 23.5
Samples: 5
Max nTPM: 31.9
Min nTPM: 8.7
P10809_1005
23.7
P10809_1053
8.7
P10809_1072
31.9
P10809_1082
24.7
P10809_1109
28.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
232.1
Monaco sample
nTPM
Classical monocyte nTPM: 232.1
Samples: 4
Max nTPM: 267.3
Min nTPM: 192.2
RHH5313_R3680
230.8
RHH5221_R3593
238.2
RHH5250_R3622
192.2
RHH5279_R3651
267.3
Intermediate monocyte nTPM: 136.1
Samples: 4
Max nTPM: 156.0
Min nTPM: 113.2
RHH5314_R3681
156.0
RHH5222_R3594
138.5
RHH5251_R3623
113.2
RHH5280_R3652
136.6
Non-classical monocyte nTPM: 93.2
Samples: 4
Max nTPM: 101.2
Min nTPM: 83.6
RHH5315_R3682
101.2
RHH5223_R3595
88.4
RHH5252_R3624
83.6
RHH5281_R3653
99.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.9
Schmiedel sample id
TPM
Classical monocyte TPM: 66.8
Samples: 91
Max TPM: 173.2
Min TPM: 35.9
MONOCYTES_1
173.2
MONOCYTES_2
117.0
MONOCYTES_3
115.2
MONOCYTES_4
109.3
MONOCYTES_5
107.1
MONOCYTES_6
104.3
MONOCYTES_7
102.6
MONOCYTES_8
99.3
MONOCYTES_9
94.8
MONOCYTES_10
89.8
MONOCYTES_11
89.6
MONOCYTES_12
87.3
MONOCYTES_13
86.9
MONOCYTES_14
85.7
MONOCYTES_15
84.1
MONOCYTES_16
82.7
MONOCYTES_17
81.9
MONOCYTES_18
81.8
MONOCYTES_19
80.8
MONOCYTES_20
80.3
MONOCYTES_21
79.5
MONOCYTES_22
78.6
MONOCYTES_23
77.8
MONOCYTES_24
77.7
MONOCYTES_25
77.0
MONOCYTES_26
77.0
MONOCYTES_27
76.7
MONOCYTES_28
74.7
MONOCYTES_29
74.6
MONOCYTES_30
74.4
MONOCYTES_31
72.6
MONOCYTES_32
72.4
MONOCYTES_33
71.2
MONOCYTES_34
71.1
MONOCYTES_35
70.9
MONOCYTES_36
70.6
MONOCYTES_37
69.7
MONOCYTES_38
69.4
MONOCYTES_39
68.6
MONOCYTES_40
68.1
MONOCYTES_41
68.1
MONOCYTES_42
67.0
MONOCYTES_43
66.9
MONOCYTES_44
65.2
MONOCYTES_45
64.2
MONOCYTES_46
63.8
MONOCYTES_47
62.4
MONOCYTES_48
62.2
MONOCYTES_49
61.9
MONOCYTES_50
61.1
MONOCYTES_51
60.8
MONOCYTES_52
60.4
MONOCYTES_53
57.4
MONOCYTES_54
57.2
MONOCYTES_55
56.1
MONOCYTES_56
55.6
MONOCYTES_57
55.5
MONOCYTES_58
55.4
MONOCYTES_59
54.9
MONOCYTES_60
54.7
MONOCYTES_61
54.3
MONOCYTES_62
53.7
MONOCYTES_63
53.3
MONOCYTES_64
53.0
MONOCYTES_65
52.5
MONOCYTES_66
51.9
MONOCYTES_67
51.5
MONOCYTES_68
51.4
MONOCYTES_69
51.2
MONOCYTES_70
50.4
MONOCYTES_71
50.1
MONOCYTES_72
49.4
MONOCYTES_73
48.1
MONOCYTES_74
48.0
MONOCYTES_75
47.8
MONOCYTES_76
47.4
MONOCYTES_77
46.9
MONOCYTES_78
46.5
MONOCYTES_79
44.8
MONOCYTES_80
44.5
MONOCYTES_81
44.5
MONOCYTES_82
43.3
MONOCYTES_83
42.9
MONOCYTES_84
42.4
MONOCYTES_85
41.7
MONOCYTES_86
41.2
MONOCYTES_87
39.4
MONOCYTES_88
39.0
MONOCYTES_89
37.8
MONOCYTES_90
36.5
MONOCYTES_91
35.9
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Non-classical monocyte TPM: 69.9
Samples: 90
Max TPM: 134.6
Min TPM: 17.0
M2_1
134.6
M2_2
125.5
M2_3
122.2
M2_4
119.0
M2_5
106.2
M2_6
99.3
M2_7
99.0
M2_8
94.8
M2_9
94.2
M2_10
91.9
M2_11
90.5
M2_12
90.0
M2_13
88.7
M2_14
88.5
M2_15
87.7
M2_16
86.6
M2_17
86.5
M2_18
83.1
M2_19
82.6
M2_20
82.1
M2_21
80.7
M2_22
80.0
M2_23
79.6
M2_24
77.1
M2_25
76.7
M2_26
74.2
M2_27
74.2
M2_28
74.1
M2_29
72.8
M2_30
72.4
M2_31
71.9
M2_32
71.5
M2_33
70.9
M2_34
70.9
M2_35
70.4
M2_36
70.4
M2_37
70.4
M2_38
70.1
M2_39
69.7
M2_40
69.2
M2_41
69.2
M2_42
68.3
M2_43
67.3
M2_44
67.2
M2_45
66.6
M2_46
66.5
M2_47
66.4
M2_48
66.2
M2_49
65.8
M2_50
65.7
M2_51
65.4
M2_52
64.6
M2_53
63.4
M2_54
62.7
M2_55
62.3
M2_56
62.2
M2_57
61.1
M2_58
60.9
M2_59
60.4
M2_60
59.8
M2_61
59.6
M2_62
59.6
M2_63
59.3
M2_64
59.2
M2_65
58.5
M2_66
58.4
M2_67
58.4
M2_68
58.3
M2_69
57.6
M2_70
57.6
M2_71
57.2
M2_72
56.9
M2_73
56.7
M2_74
56.2
M2_75
54.8
M2_76
54.7
M2_77
54.7
M2_78
54.5
M2_79
54.5
M2_80
53.4
M2_81
52.5
M2_82
50.3
M2_83
50.1
M2_84
45.8
M2_85
45.8
M2_86
45.0
M2_87
43.1
M2_88
42.8
M2_89
42.3
M2_90
17.0
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