A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
15.6
nTPM
Schmiedel:
67.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
Classical monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.3
P10809_1003
0.7
P10809_1020
0.3
P10809_1039
0.8
P10809_1058
1.0
P10809_1080
0.6
P10809_1107
1.1
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.0
P10809_1004
1.1
P10809_1023
0.8
P10809_1042
0.8
P10809_1061
0.0
P10809_1081
0.8
P10809_1108
0.6
Non-classical monocyte nTPM: 1.1
Samples: 5
Max nTPM: 2.1
Min nTPM: 0.2
P10809_1005
0.8
P10809_1053
1.0
P10809_1072
0.2
P10809_1082
1.5
P10809_1109
2.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.6
Monaco sample
nTPM
Classical monocyte nTPM: 10.0
Samples: 4
Max nTPM: 14.1
Min nTPM: 6.8
RHH5313_R3680
9.6
RHH5221_R3593
14.1
RHH5250_R3622
9.7
RHH5279_R3651
6.8
Intermediate monocyte nTPM: 14.5
Samples: 4
Max nTPM: 29.6
Min nTPM: 3.2
RHH5314_R3681
8.5
RHH5222_R3594
16.6
RHH5251_R3623
29.6
RHH5280_R3652
3.2
Non-classical monocyte nTPM: 15.6
Samples: 4
Max nTPM: 24.5
Min nTPM: 8.6
RHH5315_R3682
24.5
RHH5223_R3595
9.2
RHH5252_R3624
20.2
RHH5281_R3653
8.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.6
Schmiedel sample id
TPM
Classical monocyte TPM: 51.3
Samples: 91
Max TPM: 70.3
Min TPM: 34.6
MONOCYTES_1
70.3
MONOCYTES_2
68.1
MONOCYTES_3
67.8
MONOCYTES_4
67.3
MONOCYTES_5
66.9
MONOCYTES_6
65.8
MONOCYTES_7
64.4
MONOCYTES_8
64.0
MONOCYTES_9
63.2
MONOCYTES_10
62.6
MONOCYTES_11
62.3
MONOCYTES_12
61.4
MONOCYTES_13
60.7
MONOCYTES_14
60.6
MONOCYTES_15
60.4
MONOCYTES_16
60.2
MONOCYTES_17
60.2
MONOCYTES_18
59.9
MONOCYTES_19
59.6
MONOCYTES_20
59.1
MONOCYTES_21
58.6
MONOCYTES_22
58.6
MONOCYTES_23
58.5
MONOCYTES_24
56.6
MONOCYTES_25
56.6
MONOCYTES_26
55.7
MONOCYTES_27
55.7
MONOCYTES_28
55.4
MONOCYTES_29
55.4
MONOCYTES_30
55.2
MONOCYTES_31
55.1
MONOCYTES_32
54.5
MONOCYTES_33
54.2
MONOCYTES_34
53.4
MONOCYTES_35
52.5
MONOCYTES_36
52.5
MONOCYTES_37
52.5
MONOCYTES_38
52.1
MONOCYTES_39
52.0
MONOCYTES_40
52.0
MONOCYTES_41
52.0
MONOCYTES_42
51.8
MONOCYTES_43
51.3
MONOCYTES_44
51.0
MONOCYTES_45
50.9
MONOCYTES_46
50.9
MONOCYTES_47
50.9
MONOCYTES_48
50.7
MONOCYTES_49
50.5
MONOCYTES_50
50.1
MONOCYTES_51
49.9
MONOCYTES_52
49.8
MONOCYTES_53
49.5
MONOCYTES_54
49.1
MONOCYTES_55
49.0
MONOCYTES_56
48.4
MONOCYTES_57
48.3
MONOCYTES_58
48.0
MONOCYTES_59
47.6
MONOCYTES_60
47.4
MONOCYTES_61
47.2
MONOCYTES_62
47.2
MONOCYTES_63
47.0
MONOCYTES_64
46.9
MONOCYTES_65
46.8
MONOCYTES_66
46.4
MONOCYTES_67
45.9
MONOCYTES_68
45.5
MONOCYTES_69
45.3
MONOCYTES_70
45.0
MONOCYTES_71
44.7
MONOCYTES_72
44.0
MONOCYTES_73
43.8
MONOCYTES_74
43.5
MONOCYTES_75
43.0
MONOCYTES_76
43.0
MONOCYTES_77
42.1
MONOCYTES_78
42.1
MONOCYTES_79
40.8
MONOCYTES_80
40.4
MONOCYTES_81
40.1
MONOCYTES_82
40.0
MONOCYTES_83
39.6
MONOCYTES_84
39.4
MONOCYTES_85
39.3
MONOCYTES_86
37.9
MONOCYTES_87
37.6
MONOCYTES_88
36.5
MONOCYTES_89
35.7
MONOCYTES_90
34.7
MONOCYTES_91
34.6
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Non-classical monocyte TPM: 67.6
Samples: 90
Max TPM: 89.7
Min TPM: 45.0
M2_1
89.7
M2_2
89.4
M2_3
87.3
M2_4
86.3
M2_5
86.0
M2_6
84.8
M2_7
84.2
M2_8
84.2
M2_9
83.1
M2_10
83.0
M2_11
81.5
M2_12
81.4
M2_13
81.4
M2_14
80.8
M2_15
80.4
M2_16
78.9
M2_17
78.9
M2_18
77.8
M2_19
77.8
M2_20
77.7
M2_21
77.3
M2_22
76.9
M2_23
76.6
M2_24
75.9
M2_25
75.9
M2_26
75.3
M2_27
75.2
M2_28
74.9
M2_29
74.9
M2_30
74.6
M2_31
74.0
M2_32
73.4
M2_33
73.3
M2_34
73.1
M2_35
73.0
M2_36
72.7
M2_37
72.6
M2_38
72.6
M2_39
72.2
M2_40
71.5
M2_41
71.3
M2_42
71.3
M2_43
70.9
M2_44
69.7
M2_45
69.5
M2_46
69.0
M2_47
68.8
M2_48
67.5
M2_49
67.0
M2_50
67.0
M2_51
66.6
M2_52
65.5
M2_53
64.9
M2_54
64.3
M2_55
64.3
M2_56
64.0
M2_57
63.8
M2_58
63.7
M2_59
63.7
M2_60
63.5
M2_61
63.0
M2_62
61.4
M2_63
61.3
M2_64
61.0
M2_65
58.9
M2_66
58.4
M2_67
56.5
M2_68
56.3
M2_69
55.5
M2_70
55.1
M2_71
55.0
M2_72
55.0
M2_73
54.9
M2_74
54.2
M2_75
53.9
M2_76
53.8
M2_77
53.5
M2_78
53.0
M2_79
51.7
M2_80
51.6
M2_81
50.8
M2_82
50.7
M2_83
50.5
M2_84
49.6
M2_85
49.2
M2_86
48.7
M2_87
46.2
M2_88
45.9
M2_89
45.8
M2_90
45.0
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