A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.1
nTPM
Monaco:
23.9
nTPM
Schmiedel:
29.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.1
HPA sample
nTPM
Classical monocyte nTPM: 4.4
Samples: 6
Max nTPM: 6.8
Min nTPM: 1.8
P10809_1003
6.8
P10809_1020
4.4
P10809_1039
1.8
P10809_1058
3.6
P10809_1080
5.9
P10809_1107
3.9
Intermediate monocyte nTPM: 4.4
Samples: 6
Max nTPM: 6.1
Min nTPM: 2.4
P10809_1004
4.2
P10809_1023
5.8
P10809_1042
3.6
P10809_1061
4.1
P10809_1081
2.4
P10809_1108
6.1
Non-classical monocyte nTPM: 5.1
Samples: 5
Max nTPM: 8.2
Min nTPM: 1.6
P10809_1005
8.2
P10809_1053
5.1
P10809_1072
5.8
P10809_1082
1.6
P10809_1109
4.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.9
Monaco sample
nTPM
Classical monocyte nTPM: 24.0
Samples: 4
Max nTPM: 33.7
Min nTPM: 18.1
RHH5313_R3680
19.6
RHH5221_R3593
33.7
RHH5250_R3622
24.4
RHH5279_R3651
18.1
Intermediate monocyte nTPM: 21.7
Samples: 4
Max nTPM: 29.3
Min nTPM: 16.3
RHH5314_R3681
19.5
RHH5222_R3594
29.3
RHH5251_R3623
16.3
RHH5280_R3652
21.8
Non-classical monocyte nTPM: 19.2
Samples: 4
Max nTPM: 24.2
Min nTPM: 14.8
RHH5315_R3682
24.2
RHH5223_R3595
15.1
RHH5252_R3624
22.8
RHH5281_R3653
14.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.9
Schmiedel sample id
TPM
Classical monocyte TPM: 29.9
Samples: 91
Max TPM: 45.4
Min TPM: 20.0
MONOCYTES_1
45.4
MONOCYTES_2
40.2
MONOCYTES_3
39.3
MONOCYTES_4
38.8
MONOCYTES_5
38.3
MONOCYTES_6
38.3
MONOCYTES_7
38.0
MONOCYTES_8
37.9
MONOCYTES_9
37.8
MONOCYTES_10
36.6
MONOCYTES_11
36.2
MONOCYTES_12
36.1
MONOCYTES_13
35.7
MONOCYTES_14
34.8
MONOCYTES_15
34.6
MONOCYTES_16
34.4
MONOCYTES_17
34.4
MONOCYTES_18
34.2
MONOCYTES_19
33.8
MONOCYTES_20
33.7
MONOCYTES_21
33.5
MONOCYTES_22
33.4
MONOCYTES_23
33.0
MONOCYTES_24
32.6
MONOCYTES_25
32.6
MONOCYTES_26
32.5
MONOCYTES_27
32.5
MONOCYTES_28
32.2
MONOCYTES_29
32.1
MONOCYTES_30
31.9
MONOCYTES_31
31.8
MONOCYTES_32
31.8
MONOCYTES_33
31.7
MONOCYTES_34
31.6
MONOCYTES_35
31.3
MONOCYTES_36
31.3
MONOCYTES_37
31.2
MONOCYTES_38
31.1
MONOCYTES_39
31.1
MONOCYTES_40
30.8
MONOCYTES_41
30.7
MONOCYTES_42
30.7
MONOCYTES_43
30.1
MONOCYTES_44
29.9
MONOCYTES_45
29.9
MONOCYTES_46
29.5
MONOCYTES_47
28.9
MONOCYTES_48
28.9
MONOCYTES_49
28.7
MONOCYTES_50
28.6
MONOCYTES_51
28.6
MONOCYTES_52
28.6
MONOCYTES_53
28.5
MONOCYTES_54
28.4
MONOCYTES_55
28.2
MONOCYTES_56
28.1
MONOCYTES_57
27.8
MONOCYTES_58
27.7
MONOCYTES_59
27.7
MONOCYTES_60
27.5
MONOCYTES_61
27.5
MONOCYTES_62
27.2
MONOCYTES_63
27.1
MONOCYTES_64
27.0
MONOCYTES_65
26.7
MONOCYTES_66
26.6
MONOCYTES_67
26.5
MONOCYTES_68
26.3
MONOCYTES_69
26.2
MONOCYTES_70
26.2
MONOCYTES_71
25.8
MONOCYTES_72
25.7
MONOCYTES_73
25.7
MONOCYTES_74
25.7
MONOCYTES_75
25.7
MONOCYTES_76
25.3
MONOCYTES_77
25.0
MONOCYTES_78
24.5
MONOCYTES_79
24.5
MONOCYTES_80
24.2
MONOCYTES_81
23.9
MONOCYTES_82
23.6
MONOCYTES_83
23.5
MONOCYTES_84
22.2
MONOCYTES_85
22.0
MONOCYTES_86
22.0
MONOCYTES_87
22.0
MONOCYTES_88
21.6
MONOCYTES_89
20.8
MONOCYTES_90
20.3
MONOCYTES_91
20.0
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Non-classical monocyte TPM: 29.6
Samples: 90
Max TPM: 49.2
Min TPM: 14.8
M2_1
49.2
M2_2
41.6
M2_3
40.9
M2_4
40.9
M2_5
40.7
M2_6
39.0
M2_7
37.1
M2_8
37.0
M2_9
36.3
M2_10
35.8
M2_11
35.3
M2_12
35.1
M2_13
34.8
M2_14
34.8
M2_15
34.6
M2_16
34.5
M2_17
34.4
M2_18
34.4
M2_19
34.4
M2_20
34.4
M2_21
34.4
M2_22
34.2
M2_23
34.1
M2_24
34.1
M2_25
33.9
M2_26
33.4
M2_27
33.2
M2_28
32.9
M2_29
32.8
M2_30
32.3
M2_31
32.2
M2_32
32.2
M2_33
32.1
M2_34
32.1
M2_35
31.9
M2_36
31.8
M2_37
31.6
M2_38
31.6
M2_39
31.4
M2_40
31.4
M2_41
31.2
M2_42
30.9
M2_43
30.8
M2_44
30.3
M2_45
29.9
M2_46
29.9
M2_47
29.3
M2_48
29.1
M2_49
29.0
M2_50
29.0
M2_51
28.7
M2_52
28.6
M2_53
28.6
M2_54
28.3
M2_55
28.3
M2_56
28.1
M2_57
27.7
M2_58
27.4
M2_59
27.4
M2_60
26.9
M2_61
26.8
M2_62
26.8
M2_63
26.5
M2_64
26.1
M2_65
26.0
M2_66
25.9
M2_67
25.7
M2_68
25.6
M2_69
25.1
M2_70
25.1
M2_71
24.9
M2_72
24.6
M2_73
24.4
M2_74
23.9
M2_75
23.7
M2_76
23.6
M2_77
23.5
M2_78
23.5
M2_79
23.1
M2_80
22.6
M2_81
21.4
M2_82
21.0
M2_83
20.6
M2_84
19.8
M2_85
19.8
M2_86
19.5
M2_87
18.7
M2_88
17.4
M2_89
16.5
M2_90
14.8
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