A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.4
nTPM
Monaco:
18.2
nTPM
Schmiedel:
14.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.4
HPA sample
nTPM
Classical monocyte nTPM: 6.4
Samples: 6
Max nTPM: 9.6
Min nTPM: 4.7
P10809_1003
9.6
P10809_1020
7.0
P10809_1039
4.9
P10809_1058
4.7
P10809_1080
5.7
P10809_1107
6.3
Intermediate monocyte nTPM: 3.2
Samples: 6
Max nTPM: 6.1
Min nTPM: 1.9
P10809_1004
2.3
P10809_1023
2.8
P10809_1042
1.9
P10809_1061
3.0
P10809_1081
3.2
P10809_1108
6.1
Non-classical monocyte nTPM: 0.7
Samples: 5
Max nTPM: 1.9
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.3
P10809_1072
1.9
P10809_1082
0.0
P10809_1109
1.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.2
Monaco sample
nTPM
Classical monocyte nTPM: 18.2
Samples: 4
Max nTPM: 19.1
Min nTPM: 17.7
RHH5313_R3680
18.3
RHH5221_R3593
17.7
RHH5250_R3622
17.7
RHH5279_R3651
19.1
Intermediate monocyte nTPM: 4.8
Samples: 4
Max nTPM: 10.8
Min nTPM: 2.4
RHH5314_R3681
3.1
RHH5222_R3594
10.8
RHH5251_R3623
3.0
RHH5280_R3652
2.4
Non-classical monocyte nTPM: 2.0
Samples: 4
Max nTPM: 7.1
Min nTPM: 0.0
RHH5315_R3682
0.8
RHH5223_R3595
0.0
RHH5252_R3624
7.1
RHH5281_R3653
0.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
Schmiedel sample id
TPM
Classical monocyte TPM: 14.1
Samples: 91
Max TPM: 30.5
Min TPM: 7.1
MONOCYTES_1
30.5
MONOCYTES_2
23.7
MONOCYTES_3
22.1
MONOCYTES_4
21.8
MONOCYTES_5
20.3
MONOCYTES_6
20.1
MONOCYTES_7
19.5
MONOCYTES_8
19.4
MONOCYTES_9
19.3
MONOCYTES_10
19.0
MONOCYTES_11
18.8
MONOCYTES_12
18.6
MONOCYTES_13
18.3
MONOCYTES_14
18.1
MONOCYTES_15
18.0
MONOCYTES_16
17.9
MONOCYTES_17
17.5
MONOCYTES_18
17.4
MONOCYTES_19
17.0
MONOCYTES_20
16.9
MONOCYTES_21
16.3
MONOCYTES_22
15.9
MONOCYTES_23
15.8
MONOCYTES_24
15.8
MONOCYTES_25
15.6
MONOCYTES_26
15.2
MONOCYTES_27
15.2
MONOCYTES_28
15.1
MONOCYTES_29
15.1
MONOCYTES_30
15.1
MONOCYTES_31
15.0
MONOCYTES_32
15.0
MONOCYTES_33
14.9
MONOCYTES_34
14.6
MONOCYTES_35
14.6
MONOCYTES_36
14.5
MONOCYTES_37
14.5
MONOCYTES_38
14.1
MONOCYTES_39
14.1
MONOCYTES_40
14.0
MONOCYTES_41
14.0
MONOCYTES_42
14.0
MONOCYTES_43
13.9
MONOCYTES_44
13.7
MONOCYTES_45
13.6
MONOCYTES_46
13.6
MONOCYTES_47
13.6
MONOCYTES_48
13.5
MONOCYTES_49
13.5
MONOCYTES_50
13.3
MONOCYTES_51
13.2
MONOCYTES_52
13.1
MONOCYTES_53
13.1
MONOCYTES_54
13.1
MONOCYTES_55
12.5
MONOCYTES_56
12.2
MONOCYTES_57
12.2
MONOCYTES_58
12.1
MONOCYTES_59
12.1
MONOCYTES_60
12.1
MONOCYTES_61
12.0
MONOCYTES_62
12.0
MONOCYTES_63
12.0
MONOCYTES_64
11.8
MONOCYTES_65
11.8
MONOCYTES_66
11.7
MONOCYTES_67
11.7
MONOCYTES_68
11.7
MONOCYTES_69
11.4
MONOCYTES_70
11.3
MONOCYTES_71
11.2
MONOCYTES_72
11.1
MONOCYTES_73
10.9
MONOCYTES_74
10.8
MONOCYTES_75
10.8
MONOCYTES_76
10.7
MONOCYTES_77
10.6
MONOCYTES_78
10.5
MONOCYTES_79
10.4
MONOCYTES_80
10.4
MONOCYTES_81
10.2
MONOCYTES_82
10.0
MONOCYTES_83
9.8
MONOCYTES_84
9.4
MONOCYTES_85
9.4
MONOCYTES_86
9.3
MONOCYTES_87
8.8
MONOCYTES_88
8.5
MONOCYTES_89
7.6
MONOCYTES_90
7.5
MONOCYTES_91
7.1
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Non-classical monocyte TPM: 1.5
Samples: 90
Max TPM: 3.2
Min TPM: 0.3
M2_1
3.2
M2_2
2.9
M2_3
2.9
M2_4
2.7
M2_5
2.7
M2_6
2.6
M2_7
2.5
M2_8
2.4
M2_9
2.4
M2_10
2.3
M2_11
2.2
M2_12
2.2
M2_13
2.2
M2_14
2.1
M2_15
2.1
M2_16
2.0
M2_17
2.0
M2_18
2.0
M2_19
2.0
M2_20
2.0
M2_21
1.9
M2_22
1.9
M2_23
1.9
M2_24
1.7
M2_25
1.7
M2_26
1.7
M2_27
1.7
M2_28
1.6
M2_29
1.6
M2_30
1.6
M2_31
1.5
M2_32
1.5
M2_33
1.5
M2_34
1.5
M2_35
1.5
M2_36
1.5
M2_37
1.4
M2_38
1.4
M2_39
1.4
M2_40
1.4
M2_41
1.4
M2_42
1.4
M2_43
1.4
M2_44
1.4
M2_45
1.4
M2_46
1.4
M2_47
1.4
M2_48
1.4
M2_49
1.4
M2_50
1.4
M2_51
1.3
M2_52
1.3
M2_53
1.3
M2_54
1.3
M2_55
1.3
M2_56
1.2
M2_57
1.2
M2_58
1.2
M2_59
1.2
M2_60
1.2
M2_61
1.2
M2_62
1.2
M2_63
1.2
M2_64
1.1
M2_65
1.1
M2_66
1.1
M2_67
1.1
M2_68
1.1
M2_69
1.1
M2_70
1.1
M2_71
1.0
M2_72
1.0
M2_73
0.9
M2_74
0.9
M2_75
0.9
M2_76
0.9
M2_77
0.8
M2_78
0.8
M2_79
0.8
M2_80
0.8
M2_81
0.7
M2_82
0.7
M2_83
0.6
M2_84
0.6
M2_85
0.5
M2_86
0.5
M2_87
0.5
M2_88
0.5
M2_89
0.4
M2_90
0.3
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