A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.7
nTPM
Monaco:
65.1
nTPM
Schmiedel:
13.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.7
HPA sample
nTPM
Memory B-cell nTPM: 9.7
Samples: 6
Max nTPM: 15.7
Min nTPM: 0.3
P10809_1017
13.8
P10809_1025
7.1
P10809_1044
0.3
P10809_1063
11.8
P10809_1092
15.7
P10809_1105
9.6
Naive B-cell nTPM: 8.1
Samples: 6
Max nTPM: 13.0
Min nTPM: 0.7
P10809_1011
8.5
P10809_1029
13.0
P10809_1048
0.7
P10809_1067
6.4
P10809_1091
9.1
P10809_1104
11.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 22.3
Samples: 4
Max nTPM: 31.3
Min nTPM: 12.8
RHH5310_R3677
25.9
RHH5218_R3590
12.8
RHH5247_R3619
31.3
RHH5276_R3648
19.3
Naive B-cell nTPM: 24.2
Samples: 4
Max nTPM: 27.3
Min nTPM: 21.1
RHH5308_R3675
25.4
RHH5216_R3588
27.3
RHH5245_R3617
21.1
RHH5274_R3646
23.0
Non-switched memory B-cell nTPM: 16.9
Samples: 4
Max nTPM: 24.1
Min nTPM: 12.2
RHH5309_R3676
17.7
RHH5217_R3589
12.2
RHH5246_R3618
24.1
RHH5275_R3647
13.7
Plasmablast nTPM: 65.1
Samples: 4
Max nTPM: 101.6
Min nTPM: 41.5
RHH5312_R3679
50.8
RHH5220_R3592
101.6
RHH5249_R3621
41.5
RHH5278_R3650
66.6
Switched memory B-cell nTPM: 17.6
Samples: 4
Max nTPM: 24.6
Min nTPM: 12.0
RHH5311_R3678
12.0
RHH5219_R3591
13.2
RHH5248_R3620
20.6
RHH5277_R3649
24.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.6
Schmiedel sample id
TPM
Naive B-cell TPM: 13.6
Samples: 91
Max TPM: 25.7
Min TPM: 4.9
B_CELL_NAIVE_1
25.7
B_CELL_NAIVE_2
24.2
B_CELL_NAIVE_3
22.3
B_CELL_NAIVE_4
20.0
B_CELL_NAIVE_5
20.0
B_CELL_NAIVE_6
19.9
B_CELL_NAIVE_7
18.8
B_CELL_NAIVE_8
18.7
B_CELL_NAIVE_9
18.5
B_CELL_NAIVE_10
18.4
B_CELL_NAIVE_11
18.3
B_CELL_NAIVE_12
17.6
B_CELL_NAIVE_13
17.4
B_CELL_NAIVE_14
17.2
B_CELL_NAIVE_15
17.0
B_CELL_NAIVE_16
17.0
B_CELL_NAIVE_17
16.7
B_CELL_NAIVE_18
16.6
B_CELL_NAIVE_19
16.4
B_CELL_NAIVE_20
16.3
B_CELL_NAIVE_21
16.2
B_CELL_NAIVE_22
16.2
B_CELL_NAIVE_23
16.0
B_CELL_NAIVE_24
15.8
B_CELL_NAIVE_25
15.4
B_CELL_NAIVE_26
15.4
B_CELL_NAIVE_27
15.1
B_CELL_NAIVE_28
15.0
B_CELL_NAIVE_29
15.0
B_CELL_NAIVE_30
15.0
B_CELL_NAIVE_31
14.6
B_CELL_NAIVE_32
14.5
B_CELL_NAIVE_33
14.4
B_CELL_NAIVE_34
14.3
B_CELL_NAIVE_35
14.3
B_CELL_NAIVE_36
14.3
B_CELL_NAIVE_37
14.3
B_CELL_NAIVE_38
14.2
B_CELL_NAIVE_39
14.0
B_CELL_NAIVE_40
14.0
B_CELL_NAIVE_41
13.9
B_CELL_NAIVE_42
13.9
B_CELL_NAIVE_43
13.8
B_CELL_NAIVE_44
13.8
B_CELL_NAIVE_45
13.7
B_CELL_NAIVE_46
13.7
B_CELL_NAIVE_47
13.6
B_CELL_NAIVE_48
13.5
B_CELL_NAIVE_49
13.5
B_CELL_NAIVE_50
13.4
B_CELL_NAIVE_51
13.3
B_CELL_NAIVE_52
13.3
B_CELL_NAIVE_53
13.3
B_CELL_NAIVE_54
13.2
B_CELL_NAIVE_55
12.9
B_CELL_NAIVE_56
12.9
B_CELL_NAIVE_57
12.8
B_CELL_NAIVE_58
12.8
B_CELL_NAIVE_59
12.8
B_CELL_NAIVE_60
12.5
B_CELL_NAIVE_61
12.2
B_CELL_NAIVE_62
12.2
B_CELL_NAIVE_63
12.1
B_CELL_NAIVE_64
12.0
B_CELL_NAIVE_65
11.9
B_CELL_NAIVE_66
11.9
B_CELL_NAIVE_67
11.8
B_CELL_NAIVE_68
11.7
B_CELL_NAIVE_69
11.6
B_CELL_NAIVE_70
11.5
B_CELL_NAIVE_71
11.4
B_CELL_NAIVE_72
11.4
B_CELL_NAIVE_73
11.3
B_CELL_NAIVE_74
10.9
B_CELL_NAIVE_75
10.4
B_CELL_NAIVE_76
10.0
B_CELL_NAIVE_77
9.1
B_CELL_NAIVE_78
8.9
B_CELL_NAIVE_79
8.7
B_CELL_NAIVE_80
8.5
B_CELL_NAIVE_81
8.3
B_CELL_NAIVE_82
8.2
B_CELL_NAIVE_83
8.0
B_CELL_NAIVE_84
7.3
B_CELL_NAIVE_85
7.1
B_CELL_NAIVE_86
6.9
B_CELL_NAIVE_87
6.3
B_CELL_NAIVE_88
6.1
B_CELL_NAIVE_89
5.9
B_CELL_NAIVE_90
5.7
B_CELL_NAIVE_91
4.9
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The Human Protein Atlas project is funded
