A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
2.2
nTPM
Schmiedel:
32.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
Classical monocyte nTPM: 1.2
Samples: 6
Max nTPM: 1.9
Min nTPM: 0.6
P10809_1003
0.6
P10809_1020
1.1
P10809_1039
1.9
P10809_1058
1.1
P10809_1080
1.0
P10809_1107
1.2
Intermediate monocyte nTPM: 0.4
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.0
P10809_1004
0.1
P10809_1023
0.1
P10809_1042
1.7
P10809_1061
0.0
P10809_1081
0.5
P10809_1108
0.0
Non-classical monocyte nTPM: 0.4
Samples: 5
Max nTPM: 0.8
Min nTPM: 0.0
P10809_1005
0.7
P10809_1053
0.2
P10809_1072
0.0
P10809_1082
0.2
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.2
Monaco sample
nTPM
Classical monocyte nTPM: 2.2
Samples: 4
Max nTPM: 3.2
Min nTPM: 1.2
RHH5313_R3680
1.2
RHH5221_R3593
2.7
RHH5250_R3622
3.2
RHH5279_R3651
1.8
Intermediate monocyte nTPM: 2.2
Samples: 4
Max nTPM: 5.7
Min nTPM: 0.2
RHH5314_R3681
5.7
RHH5222_R3594
1.8
RHH5251_R3623
0.2
RHH5280_R3652
1.0
Non-classical monocyte nTPM: 2.0
Samples: 4
Max nTPM: 2.2
Min nTPM: 1.7
RHH5315_R3682
1.7
RHH5223_R3595
2.2
RHH5252_R3624
2.0
RHH5281_R3653
2.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.3
Schmiedel sample id
TPM
Classical monocyte TPM: 32.3
Samples: 91
Max TPM: 69.6
Min TPM: 8.6
MONOCYTES_1
69.6
MONOCYTES_2
62.9
MONOCYTES_3
62.1
MONOCYTES_4
58.2
MONOCYTES_5
57.8
MONOCYTES_6
56.4
MONOCYTES_7
55.4
MONOCYTES_8
54.8
MONOCYTES_9
52.7
MONOCYTES_10
52.6
MONOCYTES_11
52.5
MONOCYTES_12
51.9
MONOCYTES_13
51.6
MONOCYTES_14
51.5
MONOCYTES_15
51.4
MONOCYTES_16
49.9
MONOCYTES_17
48.6
MONOCYTES_18
47.5
MONOCYTES_19
46.8
MONOCYTES_20
46.4
MONOCYTES_21
45.7
MONOCYTES_22
45.6
MONOCYTES_23
44.9
MONOCYTES_24
43.4
MONOCYTES_25
43.0
MONOCYTES_26
42.8
MONOCYTES_27
42.6
MONOCYTES_28
41.4
MONOCYTES_29
41.4
MONOCYTES_30
39.9
MONOCYTES_31
39.2
MONOCYTES_32
37.6
MONOCYTES_33
36.9
MONOCYTES_34
36.8
MONOCYTES_35
36.5
MONOCYTES_36
35.1
MONOCYTES_37
34.8
MONOCYTES_38
34.6
MONOCYTES_39
33.9
MONOCYTES_40
33.7
MONOCYTES_41
32.5
MONOCYTES_42
32.2
MONOCYTES_43
31.2
MONOCYTES_44
31.1
MONOCYTES_45
30.4
MONOCYTES_46
29.7
MONOCYTES_47
29.5
MONOCYTES_48
29.2
MONOCYTES_49
29.1
MONOCYTES_50
29.0
MONOCYTES_51
29.0
MONOCYTES_52
28.9
MONOCYTES_53
28.6
MONOCYTES_54
27.1
MONOCYTES_55
26.0
MONOCYTES_56
25.9
MONOCYTES_57
25.6
MONOCYTES_58
23.4
MONOCYTES_59
23.1
MONOCYTES_60
23.0
MONOCYTES_61
21.9
MONOCYTES_62
21.6
MONOCYTES_63
21.6
MONOCYTES_64
21.1
MONOCYTES_65
20.4
MONOCYTES_66
20.3
MONOCYTES_67
20.3
MONOCYTES_68
20.0
MONOCYTES_69
19.9
MONOCYTES_70
19.4
MONOCYTES_71
19.1
MONOCYTES_72
19.0
MONOCYTES_73
18.5
MONOCYTES_74
18.0
MONOCYTES_75
17.1
MONOCYTES_76
16.2
MONOCYTES_77
16.2
MONOCYTES_78
15.8
MONOCYTES_79
14.9
MONOCYTES_80
14.2
MONOCYTES_81
13.9
MONOCYTES_82
13.3
MONOCYTES_83
13.0
MONOCYTES_84
13.0
MONOCYTES_85
12.2
MONOCYTES_86
11.9
MONOCYTES_87
11.2
MONOCYTES_88
10.9
MONOCYTES_89
10.0
MONOCYTES_90
8.6
MONOCYTES_91
8.6
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Non-classical monocyte TPM: 20.6
Samples: 90
Max TPM: 42.5
Min TPM: 3.1
M2_1
42.5
M2_2
41.6
M2_3
40.4
M2_4
40.0
M2_5
39.5
M2_6
39.2
M2_7
38.7
M2_8
37.2
M2_9
36.5
M2_10
36.1
M2_11
34.5
M2_12
34.4
M2_13
34.3
M2_14
30.8
M2_15
30.8
M2_16
30.8
M2_17
30.1
M2_18
29.7
M2_19
28.8
M2_20
28.4
M2_21
27.7
M2_22
27.6
M2_23
27.1
M2_24
26.9
M2_25
26.9
M2_26
26.8
M2_27
26.8
M2_28
26.6
M2_29
26.3
M2_30
26.3
M2_31
25.5
M2_32
25.3
M2_33
25.3
M2_34
25.3
M2_35
25.0
M2_36
24.2
M2_37
24.1
M2_38
24.1
M2_39
23.4
M2_40
23.1
M2_41
21.6
M2_42
21.3
M2_43
21.2
M2_44
21.0
M2_45
21.0
M2_46
20.5
M2_47
20.3
M2_48
20.1
M2_49
19.7
M2_50
19.0
M2_51
18.7
M2_52
18.4
M2_53
17.8
M2_54
17.4
M2_55
17.3
M2_56
16.6
M2_57
16.5
M2_58
15.3
M2_59
15.1
M2_60
14.6
M2_61
14.5
M2_62
14.4
M2_63
14.0
M2_64
13.4
M2_65
12.9
M2_66
12.6
M2_67
12.2
M2_68
11.8
M2_69
10.2
M2_70
10.2
M2_71
10.1
M2_72
9.4
M2_73
9.4
M2_74
9.1
M2_75
8.9
M2_76
8.8
M2_77
8.8
M2_78
8.6
M2_79
8.3
M2_80
6.9
M2_81
6.9
M2_82
6.9
M2_83
6.2
M2_84
6.2
M2_85
6.0
M2_86
5.2
M2_87
4.2
M2_88
3.7
M2_89
3.2
M2_90
3.1
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