A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.1
nTPM
Monaco:
53.1
nTPM
Schmiedel:
74.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.1
HPA sample
nTPM
NK-cell nTPM: 2.1
Samples: 6
Max nTPM: 6.5
Min nTPM: 0.3
P10809_1013
1.1
P10809_1033
0.3
P10809_1052
1.5
P10809_1071
2.7
P10809_1093
6.5
P10809_1103
0.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.1
Monaco sample
nTPM
NK-cell nTPM: 53.1
Samples: 4
Max nTPM: 69.0
Min nTPM: 39.2
RHH5316_R3683
69.0
RHH5224_R3596
39.2
RHH5253_R3625
57.6
RHH5282_R3654
46.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.5
Schmiedel sample id
TPM
NK-cell TPM: 74.5
Samples: 90
Max TPM: 162.9
Min TPM: 19.2
NK_1
162.9
NK_2
156.1
NK_3
154.6
NK_4
152.0
NK_5
142.5
NK_6
137.7
NK_7
137.7
NK_8
137.0
NK_9
132.3
NK_10
128.4
NK_11
127.0
NK_12
118.5
NK_13
117.8
NK_14
116.7
NK_15
112.0
NK_16
111.1
NK_17
107.4
NK_18
106.6
NK_19
106.5
NK_20
105.9
NK_21
103.5
NK_22
102.2
NK_23
100.8
NK_24
97.7
NK_25
97.4
NK_26
96.5
NK_27
95.6
NK_28
91.4
NK_29
88.1
NK_30
85.9
NK_31
85.7
NK_32
85.1
NK_33
83.3
NK_34
83.0
NK_35
82.2
NK_36
82.0
NK_37
81.3
NK_38
80.1
NK_39
79.2
NK_40
77.4
NK_41
77.1
NK_42
76.3
NK_43
76.1
NK_44
70.5
NK_45
67.2
NK_46
66.9
NK_47
66.6
NK_48
66.2
NK_49
65.5
NK_50
64.4
NK_51
62.7
NK_52
61.9
NK_53
59.6
NK_54
59.3
NK_55
57.3
NK_56
55.6
NK_57
54.0
NK_58
51.6
NK_59
51.5
NK_60
51.2
NK_61
51.1
NK_62
50.3
NK_63
49.5
NK_64
49.3
NK_65
48.5
NK_66
48.5
NK_67
48.2
NK_68
47.0
NK_69
45.2
NK_70
44.3
NK_71
42.7
NK_72
42.1
NK_73
38.6
NK_74
38.1
NK_75
36.8
NK_76
36.2
NK_77
35.8
NK_78
35.0
NK_79
34.6
NK_80
32.2
NK_81
29.1
NK_82
29.0
NK_83
28.2
NK_84
27.1
NK_85
25.5
NK_86
23.5
NK_87
22.3
NK_88
20.4
NK_89
19.4
NK_90
19.2
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