A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.2
nTPM
Monaco:
10.3
nTPM
Schmiedel:
67.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.2
HPA sample
nTPM
Memory B-cell nTPM: 0.2
Samples: 6
Max nTPM: 0.7
Min nTPM: 0.0
P10809_1017
0.0
P10809_1025
0.6
P10809_1044
0.0
P10809_1063
0.0
P10809_1092
0.0
P10809_1105
0.7
Naive B-cell nTPM: 0.0
Samples: 6
Max nTPM: 0.0
Min nTPM: 0.0
P10809_1011
0.0
P10809_1029
0.0
P10809_1048
0.0
P10809_1067
0.0
P10809_1091
0.0
P10809_1104
0.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 5.3
Samples: 4
Max nTPM: 8.3
Min nTPM: 1.5
RHH5310_R3677
3.8
RHH5218_R3590
1.5
RHH5247_R3619
8.3
RHH5276_R3648
7.6
Naive B-cell nTPM: 9.9
Samples: 4
Max nTPM: 13.5
Min nTPM: 5.2
RHH5308_R3675
5.2
RHH5216_R3588
11.3
RHH5245_R3617
13.5
RHH5274_R3646
9.4
Non-switched memory B-cell nTPM: 8.6
Samples: 4
Max nTPM: 13.7
Min nTPM: 5.6
RHH5309_R3676
7.8
RHH5217_R3589
5.6
RHH5246_R3618
13.7
RHH5275_R3647
7.3
Plasmablast nTPM: 10.3
Samples: 4
Max nTPM: 18.2
Min nTPM: 6.6
RHH5312_R3679
6.6
RHH5220_R3592
6.6
RHH5249_R3621
18.2
RHH5278_R3650
9.7
Switched memory B-cell nTPM: 4.2
Samples: 4
Max nTPM: 6.7
Min nTPM: 3.2
RHH5311_R3678
3.7
RHH5219_R3591
3.2
RHH5248_R3620
6.7
RHH5277_R3649
3.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.9
Schmiedel sample id
TPM
Naive B-cell TPM: 67.9
Samples: 91
Max TPM: 129.1
Min TPM: 22.6
B_CELL_NAIVE_1
129.1
B_CELL_NAIVE_2
111.6
B_CELL_NAIVE_3
109.3
B_CELL_NAIVE_4
103.7
B_CELL_NAIVE_5
103.2
B_CELL_NAIVE_6
99.8
B_CELL_NAIVE_7
98.5
B_CELL_NAIVE_8
97.5
B_CELL_NAIVE_9
96.7
B_CELL_NAIVE_10
96.0
B_CELL_NAIVE_11
95.3
B_CELL_NAIVE_12
94.1
B_CELL_NAIVE_13
93.2
B_CELL_NAIVE_14
92.9
B_CELL_NAIVE_15
92.9
B_CELL_NAIVE_16
92.7
B_CELL_NAIVE_17
92.6
B_CELL_NAIVE_18
92.2
B_CELL_NAIVE_19
92.1
B_CELL_NAIVE_20
91.9
B_CELL_NAIVE_21
91.1
B_CELL_NAIVE_22
89.5
B_CELL_NAIVE_23
89.0
B_CELL_NAIVE_24
87.7
B_CELL_NAIVE_25
87.3
B_CELL_NAIVE_26
87.1
B_CELL_NAIVE_27
85.5
B_CELL_NAIVE_28
83.3
B_CELL_NAIVE_29
81.9
B_CELL_NAIVE_30
81.8
B_CELL_NAIVE_31
78.0
B_CELL_NAIVE_32
77.0
B_CELL_NAIVE_33
77.0
B_CELL_NAIVE_34
73.7
B_CELL_NAIVE_35
72.1
B_CELL_NAIVE_36
71.7
B_CELL_NAIVE_37
71.0
B_CELL_NAIVE_38
70.9
B_CELL_NAIVE_39
70.4
B_CELL_NAIVE_40
69.7
B_CELL_NAIVE_41
68.9
B_CELL_NAIVE_42
68.0
B_CELL_NAIVE_43
67.1
B_CELL_NAIVE_44
66.3
B_CELL_NAIVE_45
65.9
B_CELL_NAIVE_46
65.2
B_CELL_NAIVE_47
65.1
B_CELL_NAIVE_48
65.0
B_CELL_NAIVE_49
64.6
B_CELL_NAIVE_50
64.6
B_CELL_NAIVE_51
64.2
B_CELL_NAIVE_52
63.9
B_CELL_NAIVE_53
63.8
B_CELL_NAIVE_54
62.1
B_CELL_NAIVE_55
61.9
B_CELL_NAIVE_56
61.6
B_CELL_NAIVE_57
60.6
B_CELL_NAIVE_58
60.0
B_CELL_NAIVE_59
59.8
B_CELL_NAIVE_60
59.8
B_CELL_NAIVE_61
59.3
B_CELL_NAIVE_62
58.6
B_CELL_NAIVE_63
58.1
B_CELL_NAIVE_64
57.8
B_CELL_NAIVE_65
57.5
B_CELL_NAIVE_66
57.0
B_CELL_NAIVE_67
56.6
B_CELL_NAIVE_68
56.6
B_CELL_NAIVE_69
56.4
B_CELL_NAIVE_70
54.9
B_CELL_NAIVE_71
53.3
B_CELL_NAIVE_72
52.2
B_CELL_NAIVE_73
52.0
B_CELL_NAIVE_74
38.8
B_CELL_NAIVE_75
38.3
B_CELL_NAIVE_76
37.1
B_CELL_NAIVE_77
36.0
B_CELL_NAIVE_78
35.8
B_CELL_NAIVE_79
35.0
B_CELL_NAIVE_80
34.6
B_CELL_NAIVE_81
34.4
B_CELL_NAIVE_82
34.0
B_CELL_NAIVE_83
33.6
B_CELL_NAIVE_84
33.5
B_CELL_NAIVE_85
32.7
B_CELL_NAIVE_86
31.9
B_CELL_NAIVE_87
31.3
B_CELL_NAIVE_88
30.8
B_CELL_NAIVE_89
29.6
B_CELL_NAIVE_90
28.5
B_CELL_NAIVE_91
22.6
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