A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.7
nTPM
Monaco:
198.6
nTPM
Schmiedel:
191.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.7
HPA sample
nTPM
Classical monocyte nTPM: 0.3
Samples: 6
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1003
0.6
P10809_1020
0.3
P10809_1039
0.2
P10809_1058
0.4
P10809_1080
0.0
P10809_1107
0.3
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.3
P10809_1004
0.9
P10809_1023
0.6
P10809_1042
0.3
P10809_1061
0.8
P10809_1081
0.8
P10809_1108
0.6
Non-classical monocyte nTPM: 0.4
Samples: 5
Max nTPM: 0.6
Min nTPM: 0.0
P10809_1005
0.6
P10809_1053
0.3
P10809_1072
0.0
P10809_1082
0.5
P10809_1109
0.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
198.6
Monaco sample
nTPM
Classical monocyte nTPM: 198.6
Samples: 4
Max nTPM: 432.6
Min nTPM: 36.7
RHH5313_R3680
36.7
RHH5221_R3593
432.6
RHH5250_R3622
258.6
RHH5279_R3651
66.5
Intermediate monocyte nTPM: 176.6
Samples: 4
Max nTPM: 365.7
Min nTPM: 27.6
RHH5314_R3681
27.6
RHH5222_R3594
365.7
RHH5251_R3623
273.3
RHH5280_R3652
39.8
Non-classical monocyte nTPM: 99.8
Samples: 4
Max nTPM: 254.1
Min nTPM: 9.8
RHH5315_R3682
10.8
RHH5223_R3595
254.1
RHH5252_R3624
124.3
RHH5281_R3653
9.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
191.3
Schmiedel sample id
TPM
Classical monocyte TPM: 191.3
Samples: 91
Max TPM: 724.1
Min TPM: 60.1
MONOCYTES_1
724.1
MONOCYTES_2
422.6
MONOCYTES_3
380.2
MONOCYTES_4
355.8
MONOCYTES_5
327.3
MONOCYTES_6
311.0
MONOCYTES_7
284.8
MONOCYTES_8
283.8
MONOCYTES_9
277.8
MONOCYTES_10
265.9
MONOCYTES_11
264.9
MONOCYTES_12
264.2
MONOCYTES_13
263.6
MONOCYTES_14
256.9
MONOCYTES_15
246.6
MONOCYTES_16
236.7
MONOCYTES_17
232.8
MONOCYTES_18
230.7
MONOCYTES_19
230.3
MONOCYTES_20
227.4
MONOCYTES_21
221.1
MONOCYTES_22
217.4
MONOCYTES_23
217.3
MONOCYTES_24
215.7
MONOCYTES_25
215.6
MONOCYTES_26
214.4
MONOCYTES_27
214.0
MONOCYTES_28
213.6
MONOCYTES_29
211.4
MONOCYTES_30
207.5
MONOCYTES_31
207.5
MONOCYTES_32
202.1
MONOCYTES_33
195.7
MONOCYTES_34
195.2
MONOCYTES_35
194.3
MONOCYTES_36
191.2
MONOCYTES_37
190.1
MONOCYTES_38
190.0
MONOCYTES_39
189.4
MONOCYTES_40
188.4
MONOCYTES_41
187.8
MONOCYTES_42
186.5
MONOCYTES_43
184.6
MONOCYTES_44
183.3
MONOCYTES_45
181.1
MONOCYTES_46
179.8
MONOCYTES_47
178.4
MONOCYTES_48
178.4
MONOCYTES_49
177.9
MONOCYTES_50
177.0
MONOCYTES_51
173.5
MONOCYTES_52
173.2
MONOCYTES_53
171.3
MONOCYTES_54
169.9
MONOCYTES_55
168.2
MONOCYTES_56
167.6
MONOCYTES_57
167.6
MONOCYTES_58
165.7
MONOCYTES_59
163.0
MONOCYTES_60
160.5
MONOCYTES_61
157.2
MONOCYTES_62
151.0
MONOCYTES_63
148.6
MONOCYTES_64
145.8
MONOCYTES_65
143.0
MONOCYTES_66
140.3
MONOCYTES_67
139.9
MONOCYTES_68
136.0
MONOCYTES_69
135.5
MONOCYTES_70
133.9
MONOCYTES_71
132.3
MONOCYTES_72
131.8
MONOCYTES_73
130.6
MONOCYTES_74
126.2
MONOCYTES_75
124.1
MONOCYTES_76
123.5
MONOCYTES_77
123.5
MONOCYTES_78
121.8
MONOCYTES_79
120.9
MONOCYTES_80
120.9
MONOCYTES_81
119.9
MONOCYTES_82
118.2
MONOCYTES_83
113.8
MONOCYTES_84
109.1
MONOCYTES_85
100.1
MONOCYTES_86
90.4
MONOCYTES_87
90.0
MONOCYTES_88
88.2
MONOCYTES_89
86.9
MONOCYTES_90
72.1
MONOCYTES_91
60.1
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Non-classical monocyte TPM: 13.9
Samples: 90
Max TPM: 33.1
Min TPM: 3.1
M2_1
33.1
M2_2
26.8
M2_3
25.8
M2_4
24.4
M2_5
24.4
M2_6
23.9
M2_7
23.0
M2_8
22.5
M2_9
22.3
M2_10
21.4
M2_11
20.8
M2_12
20.2
M2_13
19.6
M2_14
19.4
M2_15
18.8
M2_16
18.4
M2_17
17.8
M2_18
17.5
M2_19
17.1
M2_20
16.9
M2_21
16.5
M2_22
16.4
M2_23
16.4
M2_24
16.3
M2_25
16.3
M2_26
16.1
M2_27
16.1
M2_28
16.0
M2_29
15.8
M2_30
15.7
M2_31
15.6
M2_32
15.4
M2_33
15.1
M2_34
14.8
M2_35
14.8
M2_36
14.6
M2_37
14.4
M2_38
14.3
M2_39
14.3
M2_40
14.3
M2_41
14.0
M2_42
14.0
M2_43
14.0
M2_44
13.8
M2_45
13.8
M2_46
13.7
M2_47
13.2
M2_48
13.0
M2_49
12.9
M2_50
12.9
M2_51
12.6
M2_52
12.5
M2_53
12.2
M2_54
11.9
M2_55
11.8
M2_56
11.7
M2_57
11.6
M2_58
11.1
M2_59
11.0
M2_60
10.7
M2_61
10.5
M2_62
10.4
M2_63
10.3
M2_64
10.3
M2_65
10.2
M2_66
10.2
M2_67
10.1
M2_68
10.0
M2_69
9.7
M2_70
9.6
M2_71
9.4
M2_72
9.3
M2_73
9.2
M2_74
9.0
M2_75
8.8
M2_76
8.7
M2_77
8.5
M2_78
8.5
M2_79
8.3
M2_80
8.0
M2_81
7.9
M2_82
7.9
M2_83
7.1
M2_84
6.8
M2_85
6.7
M2_86
6.5
M2_87
6.3
M2_88
6.3
M2_89
5.1
M2_90
3.1
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