A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.7
nTPM
Monaco:
6.8
nTPM
Schmiedel:
14.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.7
HPA sample
nTPM
Classical monocyte nTPM: 1.4
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.9
P10809_1003
1.6
P10809_1020
1.6
P10809_1039
0.9
P10809_1058
1.7
P10809_1080
1.3
P10809_1107
1.1
Intermediate monocyte nTPM: 1.5
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.5
P10809_1004
1.4
P10809_1023
1.0
P10809_1042
1.7
P10809_1061
0.5
P10809_1081
1.5
P10809_1108
2.6
Non-classical monocyte nTPM: 1.7
Samples: 5
Max nTPM: 5.7
Min nTPM: 0.1
P10809_1005
0.9
P10809_1053
0.1
P10809_1072
5.7
P10809_1082
0.9
P10809_1109
0.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.8
Monaco sample
nTPM
Classical monocyte nTPM: 6.8
Samples: 4
Max nTPM: 9.1
Min nTPM: 3.9
RHH5313_R3680
5.3
RHH5221_R3593
9.1
RHH5250_R3622
8.8
RHH5279_R3651
3.9
Intermediate monocyte nTPM: 5.8
Samples: 4
Max nTPM: 11.8
Min nTPM: 3.3
RHH5314_R3681
3.3
RHH5222_R3594
11.8
RHH5251_R3623
4.7
RHH5280_R3652
3.4
Non-classical monocyte nTPM: 5.7
Samples: 4
Max nTPM: 8.0
Min nTPM: 3.1
RHH5315_R3682
6.3
RHH5223_R3595
8.0
RHH5252_R3624
5.2
RHH5281_R3653
3.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.4
Schmiedel sample id
TPM
Classical monocyte TPM: 13.0
Samples: 91
Max TPM: 17.6
Min TPM: 8.8
MONOCYTES_1
17.6
MONOCYTES_2
17.2
MONOCYTES_3
16.5
MONOCYTES_4
16.5
MONOCYTES_5
16.4
MONOCYTES_6
16.2
MONOCYTES_7
16.1
MONOCYTES_8
16.0
MONOCYTES_9
15.9
MONOCYTES_10
15.6
MONOCYTES_11
15.3
MONOCYTES_12
15.0
MONOCYTES_13
14.9
MONOCYTES_14
14.8
MONOCYTES_15
14.5
MONOCYTES_16
14.5
MONOCYTES_17
14.5
MONOCYTES_18
14.5
MONOCYTES_19
14.4
MONOCYTES_20
14.4
MONOCYTES_21
14.4
MONOCYTES_22
14.4
MONOCYTES_23
14.3
MONOCYTES_24
14.2
MONOCYTES_25
14.1
MONOCYTES_26
13.9
MONOCYTES_27
13.7
MONOCYTES_28
13.7
MONOCYTES_29
13.6
MONOCYTES_30
13.6
MONOCYTES_31
13.5
MONOCYTES_32
13.4
MONOCYTES_33
13.4
MONOCYTES_34
13.4
MONOCYTES_35
13.4
MONOCYTES_36
13.3
MONOCYTES_37
13.3
MONOCYTES_38
13.3
MONOCYTES_39
13.2
MONOCYTES_40
13.1
MONOCYTES_41
13.1
MONOCYTES_42
12.9
MONOCYTES_43
12.9
MONOCYTES_44
12.9
MONOCYTES_45
12.8
MONOCYTES_46
12.8
MONOCYTES_47
12.8
MONOCYTES_48
12.7
MONOCYTES_49
12.6
MONOCYTES_50
12.6
MONOCYTES_51
12.5
MONOCYTES_52
12.5
MONOCYTES_53
12.5
MONOCYTES_54
12.5
MONOCYTES_55
12.4
MONOCYTES_56
12.4
MONOCYTES_57
12.4
MONOCYTES_58
12.4
MONOCYTES_59
12.2
MONOCYTES_60
12.2
MONOCYTES_61
12.2
MONOCYTES_62
12.1
MONOCYTES_63
12.0
MONOCYTES_64
12.0
MONOCYTES_65
12.0
MONOCYTES_66
11.9
MONOCYTES_67
11.9
MONOCYTES_68
11.9
MONOCYTES_69
11.8
MONOCYTES_70
11.8
MONOCYTES_71
11.7
MONOCYTES_72
11.4
MONOCYTES_73
11.4
MONOCYTES_74
11.4
MONOCYTES_75
11.4
MONOCYTES_76
11.2
MONOCYTES_77
11.2
MONOCYTES_78
11.2
MONOCYTES_79
11.1
MONOCYTES_80
11.1
MONOCYTES_81
11.0
MONOCYTES_82
10.9
MONOCYTES_83
10.8
MONOCYTES_84
10.8
MONOCYTES_85
10.6
MONOCYTES_86
10.6
MONOCYTES_87
10.5
MONOCYTES_88
10.4
MONOCYTES_89
10.2
MONOCYTES_90
9.5
MONOCYTES_91
8.8
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Non-classical monocyte TPM: 14.4
Samples: 90
Max TPM: 25.2
Min TPM: 9.1
M2_1
25.2
M2_2
24.8
M2_3
20.3
M2_4
20.0
M2_5
19.7
M2_6
18.7
M2_7
18.5
M2_8
18.0
M2_9
17.8
M2_10
17.3
M2_11
17.1
M2_12
17.0
M2_13
17.0
M2_14
16.9
M2_15
16.7
M2_16
16.7
M2_17
16.6
M2_18
16.5
M2_19
16.4
M2_20
16.4
M2_21
16.3
M2_22
16.3
M2_23
16.1
M2_24
16.0
M2_25
16.0
M2_26
15.8
M2_27
15.6
M2_28
15.6
M2_29
15.5
M2_30
15.3
M2_31
15.3
M2_32
15.2
M2_33
15.1
M2_34
15.0
M2_35
15.0
M2_36
15.0
M2_37
14.9
M2_38
14.8
M2_39
14.6
M2_40
14.5
M2_41
14.4
M2_42
14.4
M2_43
14.4
M2_44
14.4
M2_45
14.2
M2_46
14.2
M2_47
14.2
M2_48
14.0
M2_49
14.0
M2_50
13.9
M2_51
13.8
M2_52
13.8
M2_53
13.7
M2_54
13.6
M2_55
13.6
M2_56
13.6
M2_57
13.5
M2_58
13.4
M2_59
13.0
M2_60
13.0
M2_61
12.9
M2_62
12.7
M2_63
12.7
M2_64
12.7
M2_65
12.6
M2_66
12.5
M2_67
12.4
M2_68
12.4
M2_69
12.3
M2_70
12.3
M2_71
11.9
M2_72
11.8
M2_73
11.8
M2_74
11.7
M2_75
11.6
M2_76
11.5
M2_77
11.3
M2_78
11.3
M2_79
11.0
M2_80
10.9
M2_81
10.5
M2_82
10.2
M2_83
10.1
M2_84
10.1
M2_85
10.1
M2_86
10.0
M2_87
10.0
M2_88
9.9
M2_89
9.9
M2_90
9.1
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