A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
88.2
nTPM
Monaco:
369.9
nTPM
Schmiedel:
271.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.2
HPA sample
nTPM
Memory B-cell nTPM: 88.1
Samples: 6
Max nTPM: 135.6
Min nTPM: 28.4
P10809_1017
135.6
P10809_1025
79.8
P10809_1044
28.4
P10809_1063
81.9
P10809_1092
98.9
P10809_1105
104.3
Naive B-cell nTPM: 83.5
Samples: 6
Max nTPM: 112.8
Min nTPM: 54.6
P10809_1011
112.8
P10809_1029
85.6
P10809_1048
54.6
P10809_1067
77.4
P10809_1091
79.7
P10809_1104
91.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
369.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 296.8
Samples: 4
Max nTPM: 380.7
Min nTPM: 262.0
RHH5310_R3677
274.5
RHH5218_R3590
269.9
RHH5247_R3619
262.0
RHH5276_R3648
380.7
Naive B-cell nTPM: 333.6
Samples: 4
Max nTPM: 409.9
Min nTPM: 299.8
RHH5308_R3675
314.4
RHH5216_R3588
310.3
RHH5245_R3617
409.9
RHH5274_R3646
299.8
Non-switched memory B-cell nTPM: 351.1
Samples: 4
Max nTPM: 389.1
Min nTPM: 317.4
RHH5309_R3676
389.1
RHH5217_R3589
323.1
RHH5246_R3618
317.4
RHH5275_R3647
374.9
Plasmablast nTPM: 369.9
Samples: 4
Max nTPM: 436.0
Min nTPM: 279.9
RHH5312_R3679
369.5
RHH5220_R3592
279.9
RHH5249_R3621
394.3
RHH5278_R3650
436.0
Switched memory B-cell nTPM: 293.9
Samples: 4
Max nTPM: 329.7
Min nTPM: 264.0
RHH5311_R3678
264.0
RHH5219_R3591
279.1
RHH5248_R3620
329.7
RHH5277_R3649
302.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
271.7
Schmiedel sample id
TPM
Naive B-cell TPM: 271.7
Samples: 91
Max TPM: 345.4
Min TPM: 195.1
B_CELL_NAIVE_1
345.4
B_CELL_NAIVE_2
331.1
B_CELL_NAIVE_3
328.0
B_CELL_NAIVE_4
318.5
B_CELL_NAIVE_5
310.2
B_CELL_NAIVE_6
309.1
B_CELL_NAIVE_7
308.4
B_CELL_NAIVE_8
303.4
B_CELL_NAIVE_9
300.1
B_CELL_NAIVE_10
300.0
B_CELL_NAIVE_11
297.7
B_CELL_NAIVE_12
295.6
B_CELL_NAIVE_13
294.3
B_CELL_NAIVE_14
291.2
B_CELL_NAIVE_15
290.7
B_CELL_NAIVE_16
289.8
B_CELL_NAIVE_17
288.6
B_CELL_NAIVE_18
288.6
B_CELL_NAIVE_19
288.4
B_CELL_NAIVE_20
288.3
B_CELL_NAIVE_21
286.7
B_CELL_NAIVE_22
284.2
B_CELL_NAIVE_23
283.7
B_CELL_NAIVE_24
282.6
B_CELL_NAIVE_25
282.6
B_CELL_NAIVE_26
282.0
B_CELL_NAIVE_27
281.9
B_CELL_NAIVE_28
280.2
B_CELL_NAIVE_29
279.6
B_CELL_NAIVE_30
278.3
B_CELL_NAIVE_31
278.0
B_CELL_NAIVE_32
277.0
B_CELL_NAIVE_33
276.5
B_CELL_NAIVE_34
276.2
B_CELL_NAIVE_35
275.7
B_CELL_NAIVE_36
275.7
B_CELL_NAIVE_37
275.0
B_CELL_NAIVE_38
274.7
B_CELL_NAIVE_39
274.7
B_CELL_NAIVE_40
274.6
B_CELL_NAIVE_41
274.0
B_CELL_NAIVE_42
273.7
B_CELL_NAIVE_43
273.3
B_CELL_NAIVE_44
272.8
B_CELL_NAIVE_45
272.7
B_CELL_NAIVE_46
271.9
B_CELL_NAIVE_47
271.4
B_CELL_NAIVE_48
271.4
B_CELL_NAIVE_49
271.3
B_CELL_NAIVE_50
269.7
B_CELL_NAIVE_51
268.9
B_CELL_NAIVE_52
268.7
B_CELL_NAIVE_53
267.4
B_CELL_NAIVE_54
266.6
B_CELL_NAIVE_55
265.9
B_CELL_NAIVE_56
265.9
B_CELL_NAIVE_57
265.7
B_CELL_NAIVE_58
265.6
B_CELL_NAIVE_59
264.4
B_CELL_NAIVE_60
263.9
B_CELL_NAIVE_61
263.8
B_CELL_NAIVE_62
263.6
B_CELL_NAIVE_63
262.2
B_CELL_NAIVE_64
261.2
B_CELL_NAIVE_65
260.7
B_CELL_NAIVE_66
260.4
B_CELL_NAIVE_67
259.8
B_CELL_NAIVE_68
259.7
B_CELL_NAIVE_69
258.5
B_CELL_NAIVE_70
258.1
B_CELL_NAIVE_71
257.5
B_CELL_NAIVE_72
256.3
B_CELL_NAIVE_73
254.7
B_CELL_NAIVE_74
254.7
B_CELL_NAIVE_75
254.5
B_CELL_NAIVE_76
254.0
B_CELL_NAIVE_77
252.1
B_CELL_NAIVE_78
250.6
B_CELL_NAIVE_79
247.8
B_CELL_NAIVE_80
247.3
B_CELL_NAIVE_81
243.3
B_CELL_NAIVE_82
241.1
B_CELL_NAIVE_83
237.8
B_CELL_NAIVE_84
236.6
B_CELL_NAIVE_85
236.1
B_CELL_NAIVE_86
235.5
B_CELL_NAIVE_87
234.5
B_CELL_NAIVE_88
232.0
B_CELL_NAIVE_89
231.5
B_CELL_NAIVE_90
228.6
B_CELL_NAIVE_91
195.1
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