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BETA
  • SUMMARY

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  • BRAIN

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  • ST6GAL1
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:88.2 nTPM
Monaco:369.9 nTPM
Schmiedel:271.7 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

88.2
HPA sample nTPM
Memory B-cell
nTPM: 88.1
Samples: 6

Max nTPM: 135.6
Min nTPM: 28.4
P10809_1017 135.6
P10809_1025 79.8
P10809_1044 28.4
P10809_1063 81.9
P10809_1092 98.9
P10809_1105 104.3
Naive B-cell
nTPM: 83.5
Samples: 6

Max nTPM: 112.8
Min nTPM: 54.6
P10809_1011 112.8
P10809_1029 85.6
P10809_1048 54.6
P10809_1067 77.4
P10809_1091 79.7
P10809_1104 91.0

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

369.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 296.8
Samples: 4

Max nTPM: 380.7
Min nTPM: 262.0
RHH5310_R3677 274.5
RHH5218_R3590 269.9
RHH5247_R3619 262.0
RHH5276_R3648 380.7
Naive B-cell
nTPM: 333.6
Samples: 4

Max nTPM: 409.9
Min nTPM: 299.8
RHH5308_R3675 314.4
RHH5216_R3588 310.3
RHH5245_R3617 409.9
RHH5274_R3646 299.8
Non-switched memory B-cell
nTPM: 351.1
Samples: 4

Max nTPM: 389.1
Min nTPM: 317.4
RHH5309_R3676 389.1
RHH5217_R3589 323.1
RHH5246_R3618 317.4
RHH5275_R3647 374.9
Plasmablast
nTPM: 369.9
Samples: 4

Max nTPM: 436.0
Min nTPM: 279.9
RHH5312_R3679 369.5
RHH5220_R3592 279.9
RHH5249_R3621 394.3
RHH5278_R3650 436.0
Switched memory B-cell
nTPM: 293.9
Samples: 4

Max nTPM: 329.7
Min nTPM: 264.0
RHH5311_R3678 264.0
RHH5219_R3591 279.1
RHH5248_R3620 329.7
RHH5277_R3649 302.9

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

271.7
Schmiedel sample id TPM
Naive B-cell
TPM: 271.7
Samples: 91

Max TPM: 345.4
Min TPM: 195.1
B_CELL_NAIVE_1 345.4
B_CELL_NAIVE_2 331.1
B_CELL_NAIVE_3 328.0
B_CELL_NAIVE_4 318.5
B_CELL_NAIVE_5 310.2
B_CELL_NAIVE_6 309.1
B_CELL_NAIVE_7 308.4
B_CELL_NAIVE_8 303.4
B_CELL_NAIVE_9 300.1
B_CELL_NAIVE_10 300.0
B_CELL_NAIVE_11 297.7
B_CELL_NAIVE_12 295.6
B_CELL_NAIVE_13 294.3
B_CELL_NAIVE_14 291.2
B_CELL_NAIVE_15 290.7
B_CELL_NAIVE_16 289.8
B_CELL_NAIVE_17 288.6
B_CELL_NAIVE_18 288.6
B_CELL_NAIVE_19 288.4
B_CELL_NAIVE_20 288.3
B_CELL_NAIVE_21 286.7
B_CELL_NAIVE_22 284.2
B_CELL_NAIVE_23 283.7
B_CELL_NAIVE_24 282.6
B_CELL_NAIVE_25 282.6
B_CELL_NAIVE_26 282.0
B_CELL_NAIVE_27 281.9
B_CELL_NAIVE_28 280.2
B_CELL_NAIVE_29 279.6
B_CELL_NAIVE_30 278.3
B_CELL_NAIVE_31 278.0
B_CELL_NAIVE_32 277.0
B_CELL_NAIVE_33 276.5
B_CELL_NAIVE_34 276.2
B_CELL_NAIVE_35 275.7
B_CELL_NAIVE_36 275.7
B_CELL_NAIVE_37 275.0
B_CELL_NAIVE_38 274.7
B_CELL_NAIVE_39 274.7
B_CELL_NAIVE_40 274.6
B_CELL_NAIVE_41 274.0
B_CELL_NAIVE_42 273.7
B_CELL_NAIVE_43 273.3
B_CELL_NAIVE_44 272.8
B_CELL_NAIVE_45 272.7
B_CELL_NAIVE_46 271.9
B_CELL_NAIVE_47 271.4
B_CELL_NAIVE_48 271.4
B_CELL_NAIVE_49 271.3
B_CELL_NAIVE_50 269.7
B_CELL_NAIVE_51 268.9
B_CELL_NAIVE_52 268.7
B_CELL_NAIVE_53 267.4
B_CELL_NAIVE_54 266.6
B_CELL_NAIVE_55 265.9
B_CELL_NAIVE_56 265.9
B_CELL_NAIVE_57 265.7
B_CELL_NAIVE_58 265.6
B_CELL_NAIVE_59 264.4
B_CELL_NAIVE_60 263.9
B_CELL_NAIVE_61 263.8
B_CELL_NAIVE_62 263.6
B_CELL_NAIVE_63 262.2
B_CELL_NAIVE_64 261.2
B_CELL_NAIVE_65 260.7
B_CELL_NAIVE_66 260.4
B_CELL_NAIVE_67 259.8
B_CELL_NAIVE_68 259.7
B_CELL_NAIVE_69 258.5
B_CELL_NAIVE_70 258.1
B_CELL_NAIVE_71 257.5
B_CELL_NAIVE_72 256.3
B_CELL_NAIVE_73 254.7
B_CELL_NAIVE_74 254.7
B_CELL_NAIVE_75 254.5
B_CELL_NAIVE_76 254.0
B_CELL_NAIVE_77 252.1
B_CELL_NAIVE_78 250.6
B_CELL_NAIVE_79 247.8
B_CELL_NAIVE_80 247.3
B_CELL_NAIVE_81 243.3
B_CELL_NAIVE_82 241.1
B_CELL_NAIVE_83 237.8
B_CELL_NAIVE_84 236.6
B_CELL_NAIVE_85 236.1
B_CELL_NAIVE_86 235.5
B_CELL_NAIVE_87 234.5
B_CELL_NAIVE_88 232.0
B_CELL_NAIVE_89 231.5
B_CELL_NAIVE_90 228.6
B_CELL_NAIVE_91 195.1
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