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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:63.8 nTPM
HPA Brain:41.1 nTPM
GTEx:63.8 nTPM
Pig:183.3 nTPM
Mouse:483.8 nTPM
Allen mouse:37.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.1
Sample id Sample description nTPM
Amygdala
nTPM: 29.5
2814 Male, age 76, right hemisphere 41.9
1987 Female, age 91, left hemisphere 38.4
2514 Male, age 75, right hemisphere 25.5
2517 Female, age 94, left hemisphere 22.5
2695 Female, age 67, right hemisphere 19.0
Basal amygdala
nTPM: 38.6
2243 Female, age 91, right hemisphere 78.0
2110 Male, age 80, left hemisphere 57.6
2685 Female, age 94, left hemisphere 33.8
1955 Male, age 76, both hemispheres 24.0
2609 Male, age 75, right hemisphere 22.5
2827 Female, age 67, right hemisphere 15.3
Central amygdala
nTPM: 30.2
2239 Male, age 80, left hemisphere 42.1
1905 Male, age 76, both hemispheres 37.6
2701 Female, age 91, right hemisphere 27.6
2826 Female, age 94, left hemisphere 24.5
2515 Male, age 75, right hemisphere 19.2
Corticomedial amygdala
nTPM: 41.1
2829 Male, age 80, left hemisphere 64.2
2242 Female, age 91, right hemisphere 61.0
2429 Female, age 94, left hemisphere 46.1
2240 Male, age 76, both hemispheres 35.3
2535 Female, age 67, right hemisphere 23.7
2428 Male, age 75, right hemisphere 16.4
Lateral amygdala
nTPM: 24.8
1883 Male, age 76, both hemispheres 46.2
2534 Female, age 94, left hemisphere 38.3
2255 Female, age 91, right hemisphere 22.0
2256 Male, age 80, left hemisphere 19.0
2516 Male, age 75, right hemisphere 16.6
2830 Female, age 67, right hemisphere 6.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 63.8
Samples: 181

Max nTPM: 205.1
Min nTPM: 14.0
Std nTPM: 39.1
Median nTPM: 54.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 205.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 201.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 190.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 165.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 165.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 161.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 153.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 142.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 139.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 138.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 137.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 136.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 128.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 128.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 121.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 119.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 119.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 118.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 117.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 115.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 112.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 108.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 107.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 106.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 105.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 104.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 104.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 103.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 102.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 100.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 99.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 97.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 97.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 97.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 96.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 96.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 95.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 94.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 94.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 90.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 90.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 90.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 90.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 90.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 89.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 88.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 82.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 82.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 81.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 80.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 79.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 79.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 78.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 78.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 78.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 77.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 77.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 77.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 76.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 75.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 74.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 73.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 70.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 70.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 69.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 68.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 67.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 66.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 66.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 66.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 65.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 64.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 64.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 64.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 64.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 63.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 62.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 62.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 61.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 61.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 61.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 60.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 58.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 58.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 57.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 57.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 57.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 56.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 56.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 55.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 54.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 54.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 53.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 53.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 53.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 52.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 51.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 51.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 51.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 50.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 50.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 50.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 49.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 49.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 45.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 45.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 45.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 44.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 44.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 44.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 43.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 43.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 42.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 42.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 42.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 42.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 42.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 41.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 41.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 40.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 40.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 39.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 39.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 37.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 37.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 37.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 37.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 36.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 36.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 36.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 33.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 32.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 31.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 31.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 31.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 30.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 30.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 30.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 30.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 29.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 29.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 28.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 28.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 27.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 27.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 27.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 27.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 27.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 26.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 26.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 26.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 26.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 26.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 26.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 25.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 25.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 25.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 24.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 24.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 24.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 24.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 24.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 24.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 23.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 23.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 23.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 22.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 22.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 21.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 21.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 20.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 19.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 19.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 19.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 19.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 17.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 17.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 16.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 16.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 16.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 14.0
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AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.3
Pig sample Sample description nTPM
Amygdala
nTPM: 183.3
Samples: 4

Max nTPM: 280.3
Min nTPM: 119.4
Sample A Female 280.3
Sample B Female 119.4
Sample C Male 174.4
Sample D Male 158.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

483.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 483.8
Samples: 4

Max nTPM: 542.5
Min nTPM: 440.2
Sample A Male 542.5
Sample B Male 458.8
Sample C Female 440.2
Sample D Female 493.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

37.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 37.3
356092 Antisense, RP_040617_02_C08, Mouse strain C57BL/6J (56 days, male) 37.3
294021 Antisense, RP_040617_02_C08, Mouse strain C57BL/6J (56 days, male) 25.7

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