MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.9 nTPM
HPA Brain:43.9 nTPM
GTEx:63.9 nTPM
Pig:279.3 nTPM
Mouse:525.7 nTPM
Allen mouse:28.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.0
2219 Male, age 76, both hemispheres 58.7
1827 Male, age 72, unknown 32.7
2019 Male, age 18, unknown 31.0
1870 Female, age 42, unknown 30.5
2411 Female, age 72, unknown 24.5
2666 Male, age 74, left hemisphere 24.5
1833 Male, age 53, unknown 23.5
2828 Female, age 72, unknown 21.5
1830 Male, age 51, unknown 20.5
2586 Male, age 75, left hemisphere 12.7
Dorsal raphe nucleus
nTPM: 34.5
2298 Female, age 72, unknown 69.4
2750 Male, age 76, both hemispheres 31.2
2047 Male, age 72, unknown 29.3
1828 Male, age 53, unknown 27.6
2016 Female, age 72, unknown 14.9
Inferior colliculus
nTPM: 32.5
2097 Female, age 72, unknown 44.8
1848 Female, age 42, unknown 32.0
2849 Male, age 72, unknown 29.2
1890 Male, age 53, unknown 24.2
Median raphe nucleus
nTPM: 41.4
2220 Male, age 76, midline 41.4
Periaquaductal grey, anterior
nTPM: 28.4
1947 Male, age 18, unknown 29.3
2502 Female, age 75, unknown 28.3
1795 Male, age 51, unknown 27.6
Periaquaductal grey, dorsal
nTPM: 21.2
1840 Male, age 53, unknown 28.2
2850 Male, age 76, both hemispheres 20.8
1831 Male, age 72, unknown 19.1
2464 Female, age 72, unknown 16.9
Periaquaductal grey, lateral
nTPM: 18.1
2140 Male, age 76, both hemispheres 19.4
2053 Male, age 18, unknown 19.2
2272 Male, age 74, both hemispheres 15.7
Pretectal area
nTPM: 32.7
1944 Female, age 72, unknown 50.7
1817 Female, age 42, unknown 47.6
1816 Male, age 51, unknown 46.3
2007 Male, age 72, unknown 42.3
1815 Male, age 53, unknown 34.5
2667 Female, age 75, unknown 34.2
2224 Female, age 72, unknown 30.2
2825 Male, age 18, unknown 21.5
2407 Male, age 75, both hemispheres 19.9
2273 Male, age 74, both hemispheres 17.0
2316 Male, age 76, right hemisphere 15.7
Red nucleus
nTPM: 22.2
1821 Female, age 72, unknown 37.6
2785 Male, age 18, unknown 27.6
1954 Female, age 42, unknown 26.4
2725 Female, age 75, unknown 24.0
2769 Male, age 72, unknown 21.8
2227 Male, age 72, unknown 20.8
2584 Male, age 75, left hemisphere 20.2
1865 Male, age 51, unknown 19.9
1904 Male, age 53, unknown 19.7
2503 Female, age 72, unknown 16.4
2823 Male, age 76, right hemisphere 16.1
2588 Male, age 74, left hemisphere 16.0
Substantia nigra
nTPM: 43.9
1916 Female, age 42, unknown 76.1
1941 Male, age 53, unknown 67.7
1889 Female, age 72, unknown 51.0
2241 Male, age 72, unknown 50.0
2665 Male, age 74, both hemispheres 46.5
1851 Male, age 51, unknown 45.8
2409 Female, age 72, unknown 36.4
2699 Male, age 18, unknown 32.2
2590 Female, age 75, unknown 21.2
2583 Male, age 75, right hemisphere 11.9
Superior colliculus
nTPM: 27.5
2087 Female, age 72, unknown 40.5
2668 Female, age 75, unknown 38.8
1895 Male, age 76, right hemisphere 35.5
1796 Male, age 53, unknown 29.9
2261 Male, age 18, unknown 27.1
1839 Male, age 51, unknown 26.1
2587 Male, age 74, left hemisphere 25.0
2664 Male, age 75, both hemispheres 19.0
1913 Female, age 42, unknown 18.7
1995 Male, age 72, unknown 14.8
Ventral tegmental area
nTPM: 36.4
2218 Male, age 76, both hemispheres 52.3
2410 Female, age 72, unknown 48.8
1915 Female, age 42, unknown 46.0
1942 Male, age 51, unknown 27.0
2223 Female, age 72, unknown 24.3
2021 Male, age 53, unknown 19.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 63.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.9
Samples: 183

Max nTPM: 497.8
Min nTPM: 9.8
Std nTPM: 69.0
Median nTPM: 36.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 497.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 406.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 282.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 266.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 249.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 228.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 202.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 201.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 187.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 187.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 171.5
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 279.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 165.8
Samples: 4

Max nTPM: 265.6
Min nTPM: 67.2
Sample A Female 265.6
Sample B Female 113.1
Sample C Male 217.3
Sample D Male 67.2
Midbrain
nTPM: 214.1
Samples: 4

Max nTPM: 343.1
Min nTPM: 72.1
Sample A Female 72.1
Sample B Female 140.2
Sample C Male 343.1
Sample D Male 300.9
Periaqueductal gray
nTPM: 161.2
Samples: 3

Max nTPM: 210.0
Min nTPM: 132.2
Sample B Female 141.3
Sample C Male 210.0
Sample D Male 132.2
Superior colliculi
nTPM: 279.3
Samples: 4

Max nTPM: 388.7
Min nTPM: 128.2
Sample A Female 313.6
Sample B Female 128.2
Sample C Male 388.7
Sample D Male 286.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 525.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 525.7
Samples: 4

Max nTPM: 568.1
Min nTPM: 477.6
Sample A Male 477.6
Sample B Male 541.1
Sample C Female 568.1
Sample D Female 516.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 28.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 28.6
356092 Antisense, RP_040617_02_C08, Mouse strain C57BL/6J (56 days, male) 28.6
294021 Antisense, RP_040617_02_C08, Mouse strain C57BL/6J (56 days, male) 19.8

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