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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:70.6 nTPM
Pig:290.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA003154Antibody CAB009324
Glial cells Not detectedNot detected
Neuronal cells HighHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

70.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 70.6
Samples: 300

Max nTPM: 241.5
Min nTPM: 10.6
Std nTPM: 46.8
Median nTPM: 63.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 241.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 226.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 215.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 209.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 199.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 184.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 180.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 177.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 173.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 166.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 166.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 165.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 165.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 162.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 155.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 155.9
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 153.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 150.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 149.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 145.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 144.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 143.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 143.4
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 143.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 142.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 142.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 141.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 141.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 140.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 136.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 136.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 135.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 134.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 133.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 132.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 131.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 129.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 125.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 125.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 125.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 125.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 123.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 123.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 119.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 119.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 118.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 118.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 117.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 116.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 115.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 115.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 114.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 114.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 114.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 113.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 112.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 110.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 110.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 110.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 110.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 109.6
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 108.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 108.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 108.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 108.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 108.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 107.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 107.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 106.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 105.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 103.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 103.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 101.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 101.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 100.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 99.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 99.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 98.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 97.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 96.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 96.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 96.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 95.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 95.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 94.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 94.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 93.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 91.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 91.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 90.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 90.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 90.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 90.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 89.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 89.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 89.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 89.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 89.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 89.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 88.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 88.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 86.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 86.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 85.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 84.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 84.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 83.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 82.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 82.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 81.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 81.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 81.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 81.0
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 80.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 80.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 80.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 80.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 79.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 79.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 78.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 78.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 78.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 77.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 76.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 76.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 76.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 75.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 75.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 74.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 74.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 73.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 73.1
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 72.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 71.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 70.9
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 70.1
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 70.0
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 69.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 69.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 68.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 67.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 67.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 67.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 66.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 66.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 65.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 64.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 64.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 63.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 63.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 63.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 62.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 62.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 61.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 61.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 60.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 60.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 60.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 59.9
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 59.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 58.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 58.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 58.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 58.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 57.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 55.9
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 54.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 54.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 54.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 53.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 52.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 52.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 52.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 51.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 51.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 51.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 50.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 50.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 49.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 49.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 48.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 47.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 47.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 47.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 46.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 45.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 45.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 43.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 43.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 43.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 42.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 41.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 41.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 41.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 41.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 41.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 40.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 40.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 39.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 39.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 38.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 38.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 38.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 37.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 36.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 36.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 36.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 35.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 34.7
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 33.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 33.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 33.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 32.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 31.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 31.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 31.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 31.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 31.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 31.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 31.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 31.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 30.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 30.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 29.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 29.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 29.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 29.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 28.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 28.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 28.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 28.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 27.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 27.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 27.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 26.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 26.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 26.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 26.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 26.4
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 26.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 25.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 24.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 24.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 24.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 24.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 23.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 23.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 23.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 22.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 22.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 22.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 22.3
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 22.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 21.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 21.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 21.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 20.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 20.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 20.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 19.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 19.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 18.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 18.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 18.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 18.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 18.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 18.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 17.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 17.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 17.7
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 17.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 17.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 17.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 17.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 17.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 17.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 16.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 16.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 16.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 16.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 16.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 15.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 15.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 15.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 15.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 15.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 14.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 14.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 14.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 14.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 13.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 13.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 13.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 13.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 12.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 12.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 12.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 12.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 12.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 10.6
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CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

290.5
Pig sample Sample description nTPM
Caudate
nTPM: 290.5
Samples: 4

Max nTPM: 351.2
Min nTPM: 230.0
Sample A Female 230.0
Sample B Female 280.3
Sample C Male 351.2
Sample D Male 300.3

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