A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.0
nTPM
Monaco:
21.7
nTPM
Schmiedel:
24.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.3
P10809_1003
1.7
P10809_1020
0.7
P10809_1039
0.3
P10809_1058
0.8
P10809_1080
0.8
P10809_1107
0.8
Intermediate monocyte nTPM: 0.8
Samples: 6
Max nTPM: 2.7
Min nTPM: 0.2
P10809_1004
2.7
P10809_1023
0.7
P10809_1042
0.2
P10809_1061
0.2
P10809_1081
0.8
P10809_1108
0.3
Non-classical monocyte nTPM: 1.0
Samples: 5
Max nTPM: 2.0
Min nTPM: 0.5
P10809_1005
2.0
P10809_1053
0.5
P10809_1072
1.4
P10809_1082
0.7
P10809_1109
0.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.7
Monaco sample
nTPM
Classical monocyte nTPM: 19.7
Samples: 4
Max nTPM: 22.9
Min nTPM: 15.9
RHH5313_R3680
15.9
RHH5221_R3593
21.9
RHH5250_R3622
22.9
RHH5279_R3651
18.0
Intermediate monocyte nTPM: 15.7
Samples: 4
Max nTPM: 18.4
Min nTPM: 12.3
RHH5314_R3681
16.1
RHH5222_R3594
18.4
RHH5251_R3623
16.0
RHH5280_R3652
12.3
Non-classical monocyte nTPM: 21.8
Samples: 4
Max nTPM: 28.2
Min nTPM: 17.1
RHH5315_R3682
17.1
RHH5223_R3595
28.2
RHH5252_R3624
19.0
RHH5281_R3653
22.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.1
Schmiedel sample id
TPM
Classical monocyte TPM: 24.1
Samples: 91
Max TPM: 30.3
Min TPM: 18.2
MONOCYTES_1
30.3
MONOCYTES_2
28.7
MONOCYTES_3
28.3
MONOCYTES_4
28.3
MONOCYTES_5
28.3
MONOCYTES_6
27.8
MONOCYTES_7
27.8
MONOCYTES_8
27.6
MONOCYTES_9
27.6
MONOCYTES_10
27.4
MONOCYTES_11
27.3
MONOCYTES_12
27.3
MONOCYTES_13
27.1
MONOCYTES_14
27.0
MONOCYTES_15
26.9
MONOCYTES_16
26.6
MONOCYTES_17
26.2
MONOCYTES_18
26.0
MONOCYTES_19
25.9
MONOCYTES_20
25.9
MONOCYTES_21
25.8
MONOCYTES_22
25.8
MONOCYTES_23
25.8
MONOCYTES_24
25.7
MONOCYTES_25
25.6
MONOCYTES_26
25.6
MONOCYTES_27
25.5
MONOCYTES_28
25.5
MONOCYTES_29
25.4
MONOCYTES_30
25.4
MONOCYTES_31
25.4
MONOCYTES_32
25.4
MONOCYTES_33
25.3
MONOCYTES_34
25.0
MONOCYTES_35
25.0
MONOCYTES_36
24.9
MONOCYTES_37
24.8
MONOCYTES_38
24.7
MONOCYTES_39
24.7
MONOCYTES_40
24.6
MONOCYTES_41
24.5
MONOCYTES_42
24.5
MONOCYTES_43
24.4
MONOCYTES_44
24.1
MONOCYTES_45
24.1
MONOCYTES_46
24.0
MONOCYTES_47
24.0
MONOCYTES_48
23.9
MONOCYTES_49
23.7
MONOCYTES_50
23.7
MONOCYTES_51
23.7
MONOCYTES_52
23.7
MONOCYTES_53
23.7
MONOCYTES_54
23.6
MONOCYTES_55
23.6
MONOCYTES_56
23.5
MONOCYTES_57
23.5
MONOCYTES_58
23.3
MONOCYTES_59
23.3
MONOCYTES_60
23.3
MONOCYTES_61
23.3
MONOCYTES_62
23.1
MONOCYTES_63
23.1
MONOCYTES_64
23.0
MONOCYTES_65
23.0
MONOCYTES_66
22.9
MONOCYTES_67
22.8
MONOCYTES_68
22.7
MONOCYTES_69
22.5
MONOCYTES_70
22.4
MONOCYTES_71
22.3
MONOCYTES_72
22.2
MONOCYTES_73
22.1
MONOCYTES_74
22.0
MONOCYTES_75
21.7
MONOCYTES_76
21.5
MONOCYTES_77
21.4
MONOCYTES_78
21.2
MONOCYTES_79
21.0
MONOCYTES_80
21.0
MONOCYTES_81
21.0
MONOCYTES_82
20.9
MONOCYTES_83
20.7
MONOCYTES_84
20.6
MONOCYTES_85
20.3
MONOCYTES_86
20.3
MONOCYTES_87
20.0
MONOCYTES_88
19.8
MONOCYTES_89
19.8
MONOCYTES_90
19.5
MONOCYTES_91
18.2
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Non-classical monocyte TPM: 21.6
Samples: 90
Max TPM: 28.4
Min TPM: 15.5
M2_1
28.4
M2_2
25.7
M2_3
25.3
M2_4
25.3
M2_5
25.1
M2_6
25.1
M2_7
25.0
M2_8
24.9
M2_9
24.7
M2_10
24.5
M2_11
24.3
M2_12
24.0
M2_13
23.9
M2_14
23.7
M2_15
23.6
M2_16
23.6
M2_17
23.4
M2_18
23.2
M2_19
23.1
M2_20
23.0
M2_21
22.9
M2_22
22.8
M2_23
22.8
M2_24
22.7
M2_25
22.7
M2_26
22.7
M2_27
22.7
M2_28
22.7
M2_29
22.7
M2_30
22.6
M2_31
22.6
M2_32
22.6
M2_33
22.6
M2_34
22.6
M2_35
22.5
M2_36
22.4
M2_37
22.3
M2_38
22.3
M2_39
22.2
M2_40
22.2
M2_41
22.1
M2_42
22.1
M2_43
22.0
M2_44
21.9
M2_45
21.6
M2_46
21.6
M2_47
21.5
M2_48
21.4
M2_49
21.4
M2_50
21.4
M2_51
21.3
M2_52
21.3
M2_53
21.1
M2_54
21.0
M2_55
20.9
M2_56
20.9
M2_57
20.8
M2_58
20.8
M2_59
20.8
M2_60
20.7
M2_61
20.7
M2_62
20.6
M2_63
20.5
M2_64
20.4
M2_65
20.3
M2_66
20.3
M2_67
20.3
M2_68
20.3
M2_69
20.2
M2_70
20.2
M2_71
20.2
M2_72
20.1
M2_73
20.1
M2_74
19.9
M2_75
19.9
M2_76
19.8
M2_77
19.5
M2_78
19.3
M2_79
19.2
M2_80
19.1
M2_81
18.9
M2_82
18.8
M2_83
18.5
M2_84
18.5
M2_85
18.4
M2_86
18.0
M2_87
17.8
M2_88
16.8
M2_89
16.2
M2_90
15.5
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