A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.9
nTPM
Monaco:
106.0
nTPM
Schmiedel:
39.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.9
HPA sample
nTPM
Classical monocyte nTPM: 11.8
Samples: 6
Max nTPM: 14.7
Min nTPM: 10.0
P10809_1003
11.2
P10809_1020
11.4
P10809_1039
10.9
P10809_1058
14.7
P10809_1080
10.0
P10809_1107
12.4
Intermediate monocyte nTPM: 11.7
Samples: 6
Max nTPM: 13.4
Min nTPM: 8.2
P10809_1004
11.8
P10809_1023
10.7
P10809_1042
12.8
P10809_1061
8.2
P10809_1081
13.4
P10809_1108
13.2
Non-classical monocyte nTPM: 15.9
Samples: 5
Max nTPM: 30.1
Min nTPM: 10.2
P10809_1005
12.4
P10809_1053
10.4
P10809_1072
30.1
P10809_1082
16.3
P10809_1109
10.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
106.0
Monaco sample
nTPM
Classical monocyte nTPM: 103.7
Samples: 4
Max nTPM: 120.0
Min nTPM: 80.1
RHH5313_R3680
107.5
RHH5221_R3593
107.3
RHH5250_R3622
120.0
RHH5279_R3651
80.1
Intermediate monocyte nTPM: 100.4
Samples: 4
Max nTPM: 128.1
Min nTPM: 80.1
RHH5314_R3681
111.8
RHH5222_R3594
128.1
RHH5251_R3623
81.6
RHH5280_R3652
80.1
Non-classical monocyte nTPM: 106.0
Samples: 4
Max nTPM: 114.0
Min nTPM: 95.6
RHH5315_R3682
106.8
RHH5223_R3595
114.0
RHH5252_R3624
95.6
RHH5281_R3653
107.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.5
Schmiedel sample id
TPM
Classical monocyte TPM: 19.2
Samples: 91
Max TPM: 30.3
Min TPM: 12.2
MONOCYTES_1
30.3
MONOCYTES_2
28.6
MONOCYTES_3
26.3
MONOCYTES_4
26.2
MONOCYTES_5
25.8
MONOCYTES_6
25.8
MONOCYTES_7
25.4
MONOCYTES_8
24.9
MONOCYTES_9
24.8
MONOCYTES_10
24.8
MONOCYTES_11
24.8
MONOCYTES_12
24.4
MONOCYTES_13
24.2
MONOCYTES_14
23.6
MONOCYTES_15
23.5
MONOCYTES_16
23.3
MONOCYTES_17
22.9
MONOCYTES_18
22.9
MONOCYTES_19
22.7
MONOCYTES_20
22.7
MONOCYTES_21
22.6
MONOCYTES_22
22.6
MONOCYTES_23
21.6
MONOCYTES_24
21.3
MONOCYTES_25
21.3
MONOCYTES_26
21.2
MONOCYTES_27
21.2
MONOCYTES_28
21.1
MONOCYTES_29
21.1
MONOCYTES_30
21.0
MONOCYTES_31
20.8
MONOCYTES_32
20.7
MONOCYTES_33
20.4
MONOCYTES_34
20.3
MONOCYTES_35
20.2
MONOCYTES_36
20.2
MONOCYTES_37
20.0
MONOCYTES_38
20.0
MONOCYTES_39
19.9
MONOCYTES_40
19.8
MONOCYTES_41
19.4
MONOCYTES_42
19.4
MONOCYTES_43
19.3
MONOCYTES_44
19.1
MONOCYTES_45
19.0
MONOCYTES_46
18.6
MONOCYTES_47
18.5
MONOCYTES_48
18.5
MONOCYTES_49
18.5
MONOCYTES_50
18.5
MONOCYTES_51
18.3
MONOCYTES_52
18.3
MONOCYTES_53
18.2
MONOCYTES_54
18.2
MONOCYTES_55
18.1
MONOCYTES_56
18.0
MONOCYTES_57
17.9
MONOCYTES_58
17.8
MONOCYTES_59
17.7
MONOCYTES_60
17.7
MONOCYTES_61
17.4
MONOCYTES_62
17.3
MONOCYTES_63
17.0
MONOCYTES_64
17.0
MONOCYTES_65
16.8
MONOCYTES_66
16.4
MONOCYTES_67
16.3
MONOCYTES_68
16.2
MONOCYTES_69
16.0
MONOCYTES_70
15.9
MONOCYTES_71
15.8
MONOCYTES_72
15.3
MONOCYTES_73
15.3
MONOCYTES_74
15.2
MONOCYTES_75
15.0
MONOCYTES_76
14.9
MONOCYTES_77
14.8
MONOCYTES_78
14.2
MONOCYTES_79
14.2
MONOCYTES_80
14.2
MONOCYTES_81
13.9
MONOCYTES_82
13.6
MONOCYTES_83
13.6
MONOCYTES_84
13.1
MONOCYTES_85
13.1
MONOCYTES_86
13.1
MONOCYTES_87
12.8
MONOCYTES_88
12.7
MONOCYTES_89
12.7
MONOCYTES_90
12.5
MONOCYTES_91
12.2
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Non-classical monocyte TPM: 39.5
Samples: 90
Max TPM: 59.6
Min TPM: 25.5
M2_1
59.6
M2_2
57.6
M2_3
56.8
M2_4
55.5
M2_5
53.9
M2_6
52.7
M2_7
52.3
M2_8
52.1
M2_9
52.1
M2_10
51.0
M2_11
50.6
M2_12
47.8
M2_13
47.3
M2_14
47.1
M2_15
46.8
M2_16
45.6
M2_17
44.7
M2_18
43.8
M2_19
43.8
M2_20
42.6
M2_21
42.5
M2_22
42.4
M2_23
42.3
M2_24
42.2
M2_25
42.1
M2_26
42.0
M2_27
41.7
M2_28
41.5
M2_29
41.4
M2_30
41.3
M2_31
41.1
M2_32
41.1
M2_33
40.8
M2_34
40.6
M2_35
40.5
M2_36
40.4
M2_37
40.3
M2_38
40.1
M2_39
40.0
M2_40
40.0
M2_41
39.8
M2_42
39.7
M2_43
39.7
M2_44
39.4
M2_45
39.3
M2_46
39.3
M2_47
38.8
M2_48
38.2
M2_49
37.9
M2_50
37.9
M2_51
37.0
M2_52
36.9
M2_53
36.9
M2_54
36.6
M2_55
36.1
M2_56
36.0
M2_57
35.9
M2_58
35.7
M2_59
35.5
M2_60
35.4
M2_61
35.4
M2_62
35.3
M2_63
35.3
M2_64
34.8
M2_65
34.6
M2_66
34.5
M2_67
34.4
M2_68
34.2
M2_69
34.2
M2_70
34.1
M2_71
34.1
M2_72
34.0
M2_73
33.8
M2_74
33.8
M2_75
33.7
M2_76
33.4
M2_77
33.1
M2_78
33.0
M2_79
32.3
M2_80
32.1
M2_81
32.1
M2_82
31.8
M2_83
30.9
M2_84
30.8
M2_85
30.6
M2_86
29.2
M2_87
28.8
M2_88
28.7
M2_89
28.4
M2_90
25.5
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