A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.9
nTPM
Monaco:
2.7
nTPM
Schmiedel:
16.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.9
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 2.8
Min nTPM: 0.0
P10809_1003
2.8
P10809_1020
0.2
P10809_1039
0.1
P10809_1058
0.5
P10809_1080
0.0
P10809_1107
2.0
Intermediate monocyte nTPM: 0.3
Samples: 6
Max nTPM: 0.8
Min nTPM: 0.0
P10809_1004
0.8
P10809_1023
0.0
P10809_1042
0.0
P10809_1061
0.0
P10809_1081
0.5
P10809_1108
0.3
Non-classical monocyte nTPM: 0.0
Samples: 5
Max nTPM: 0.0
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.0
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.7
Monaco sample
nTPM
Classical monocyte nTPM: 2.7
Samples: 4
Max nTPM: 7.7
Min nTPM: 0.1
RHH5313_R3680
0.6
RHH5221_R3593
2.2
RHH5250_R3622
0.1
RHH5279_R3651
7.7
Intermediate monocyte nTPM: 2.8
Samples: 4
Max nTPM: 6.2
Min nTPM: 0.0
RHH5314_R3681
6.2
RHH5222_R3594
0.7
RHH5251_R3623
4.1
RHH5280_R3652
0.0
Non-classical monocyte nTPM: 0.6
Samples: 4
Max nTPM: 1.4
Min nTPM: 0.0
RHH5315_R3682
1.0
RHH5223_R3595
0.0
RHH5252_R3624
1.4
RHH5281_R3653
0.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.2
Schmiedel sample id
TPM
Classical monocyte TPM: 16.2
Samples: 91
Max TPM: 34.2
Min TPM: 5.4
MONOCYTES_1
34.2
MONOCYTES_2
31.7
MONOCYTES_3
28.5
MONOCYTES_4
28.0
MONOCYTES_5
27.8
MONOCYTES_6
26.2
MONOCYTES_7
26.1
MONOCYTES_8
25.0
MONOCYTES_9
24.2
MONOCYTES_10
23.7
MONOCYTES_11
23.6
MONOCYTES_12
23.1
MONOCYTES_13
22.6
MONOCYTES_14
22.5
MONOCYTES_15
22.2
MONOCYTES_16
22.2
MONOCYTES_17
22.1
MONOCYTES_18
21.6
MONOCYTES_19
20.9
MONOCYTES_20
20.8
MONOCYTES_21
20.6
MONOCYTES_22
20.5
MONOCYTES_23
20.5
MONOCYTES_24
20.0
MONOCYTES_25
19.7
MONOCYTES_26
19.1
MONOCYTES_27
18.9
MONOCYTES_28
18.8
MONOCYTES_29
18.7
MONOCYTES_30
18.5
MONOCYTES_31
18.1
MONOCYTES_32
18.0
MONOCYTES_33
17.9
MONOCYTES_34
17.8
MONOCYTES_35
17.6
MONOCYTES_36
17.2
MONOCYTES_37
16.9
MONOCYTES_38
16.8
MONOCYTES_39
16.5
MONOCYTES_40
16.4
MONOCYTES_41
16.4
MONOCYTES_42
16.3
MONOCYTES_43
16.2
MONOCYTES_44
16.0
MONOCYTES_45
15.8
MONOCYTES_46
15.3
MONOCYTES_47
15.2
MONOCYTES_48
15.0
MONOCYTES_49
14.9
MONOCYTES_50
14.9
MONOCYTES_51
14.9
MONOCYTES_52
14.6
MONOCYTES_53
13.9
MONOCYTES_54
13.8
MONOCYTES_55
13.7
MONOCYTES_56
13.6
MONOCYTES_57
13.6
MONOCYTES_58
13.5
MONOCYTES_59
13.5
MONOCYTES_60
13.4
MONOCYTES_61
13.3
MONOCYTES_62
13.2
MONOCYTES_63
12.7
MONOCYTES_64
12.7
MONOCYTES_65
12.7
MONOCYTES_66
12.5
MONOCYTES_67
12.5
MONOCYTES_68
12.2
MONOCYTES_69
11.7
MONOCYTES_70
11.3
MONOCYTES_71
11.3
MONOCYTES_72
11.2
MONOCYTES_73
11.2
MONOCYTES_74
11.0
MONOCYTES_75
10.6
MONOCYTES_76
10.6
MONOCYTES_77
10.1
MONOCYTES_78
9.9
MONOCYTES_79
9.9
MONOCYTES_80
9.7
MONOCYTES_81
9.0
MONOCYTES_82
9.0
MONOCYTES_83
8.9
MONOCYTES_84
8.4
MONOCYTES_85
7.9
MONOCYTES_86
7.8
MONOCYTES_87
7.6
MONOCYTES_88
7.3
MONOCYTES_89
7.0
MONOCYTES_90
6.7
MONOCYTES_91
5.4
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Non-classical monocyte TPM: 1.2
Samples: 90
Max TPM: 2.3
Min TPM: 0.3
M2_1
2.3
M2_2
2.3
M2_3
2.2
M2_4
2.2
M2_5
2.2
M2_6
2.1
M2_7
2.1
M2_8
2.0
M2_9
2.0
M2_10
1.9
M2_11
1.9
M2_12
1.9
M2_13
1.8
M2_14
1.8
M2_15
1.8
M2_16
1.8
M2_17
1.7
M2_18
1.7
M2_19
1.7
M2_20
1.6
M2_21
1.6
M2_22
1.5
M2_23
1.5
M2_24
1.5
M2_25
1.5
M2_26
1.5
M2_27
1.5
M2_28
1.4
M2_29
1.4
M2_30
1.4
M2_31
1.4
M2_32
1.4
M2_33
1.3
M2_34
1.3
M2_35
1.3
M2_36
1.2
M2_37
1.2
M2_38
1.2
M2_39
1.2
M2_40
1.2
M2_41
1.2
M2_42
1.2
M2_43
1.1
M2_44
1.1
M2_45
1.1
M2_46
1.1
M2_47
1.1
M2_48
1.1
M2_49
1.1
M2_50
1.1
M2_51
1.1
M2_52
1.1
M2_53
1.0
M2_54
1.0
M2_55
1.0
M2_56
1.0
M2_57
1.0
M2_58
0.9
M2_59
0.9
M2_60
0.9
M2_61
0.9
M2_62
0.8
M2_63
0.8
M2_64
0.8
M2_65
0.7
M2_66
0.7
M2_67
0.7
M2_68
0.7
M2_69
0.7
M2_70
0.7
M2_71
0.7
M2_72
0.6
M2_73
0.6
M2_74
0.6
M2_75
0.5
M2_76
0.5
M2_77
0.5
M2_78
0.5
M2_79
0.5
M2_80
0.5
M2_81
0.5
M2_82
0.5
M2_83
0.5
M2_84
0.5
M2_85
0.4
M2_86
0.4
M2_87
0.4
M2_88
0.4
M2_89
0.4
M2_90
0.3
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