A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.8
nTPM
Monaco:
45.7
nTPM
Schmiedel:
11.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.8
HPA sample
nTPM
Memory B-cell nTPM: 23.8
Samples: 6
Max nTPM: 33.9
Min nTPM: 10.8
P10809_1017
20.2
P10809_1025
26.4
P10809_1044
10.8
P10809_1063
29.2
P10809_1092
33.9
P10809_1105
22.3
Naive B-cell nTPM: 22.3
Samples: 6
Max nTPM: 31.2
Min nTPM: 5.3
P10809_1011
18.0
P10809_1029
28.4
P10809_1048
5.3
P10809_1067
31.2
P10809_1091
29.5
P10809_1104
21.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 31.4
Samples: 4
Max nTPM: 39.1
Min nTPM: 26.1
RHH5310_R3677
39.1
RHH5218_R3590
27.6
RHH5247_R3619
26.1
RHH5276_R3648
32.7
Naive B-cell nTPM: 34.2
Samples: 4
Max nTPM: 37.2
Min nTPM: 30.5
RHH5308_R3675
30.5
RHH5216_R3588
33.0
RHH5245_R3617
36.1
RHH5274_R3646
37.2
Non-switched memory B-cell nTPM: 28.8
Samples: 4
Max nTPM: 39.5
Min nTPM: 18.7
RHH5309_R3676
32.6
RHH5217_R3589
39.5
RHH5246_R3618
18.7
RHH5275_R3647
24.4
Plasmablast nTPM: 45.7
Samples: 4
Max nTPM: 57.6
Min nTPM: 37.5
RHH5312_R3679
46.9
RHH5220_R3592
57.6
RHH5249_R3621
40.7
RHH5278_R3650
37.5
Switched memory B-cell nTPM: 36.0
Samples: 4
Max nTPM: 43.0
Min nTPM: 28.6
RHH5311_R3678
42.4
RHH5219_R3591
28.6
RHH5248_R3620
43.0
RHH5277_R3649
30.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.5
Schmiedel sample id
TPM
Naive B-cell TPM: 11.5
Samples: 91
Max TPM: 15.6
Min TPM: 7.5
B_CELL_NAIVE_1
15.6
B_CELL_NAIVE_2
15.5
B_CELL_NAIVE_3
15.3
B_CELL_NAIVE_4
15.2
B_CELL_NAIVE_5
14.7
B_CELL_NAIVE_6
14.4
B_CELL_NAIVE_7
14.3
B_CELL_NAIVE_8
14.3
B_CELL_NAIVE_9
14.0
B_CELL_NAIVE_10
13.9
B_CELL_NAIVE_11
13.7
B_CELL_NAIVE_12
13.6
B_CELL_NAIVE_13
13.5
B_CELL_NAIVE_14
13.2
B_CELL_NAIVE_15
13.2
B_CELL_NAIVE_16
13.2
B_CELL_NAIVE_17
12.8
B_CELL_NAIVE_18
12.8
B_CELL_NAIVE_19
12.8
B_CELL_NAIVE_20
12.7
B_CELL_NAIVE_21
12.7
B_CELL_NAIVE_22
12.7
B_CELL_NAIVE_23
12.6
B_CELL_NAIVE_24
12.6
B_CELL_NAIVE_25
12.5
B_CELL_NAIVE_26
12.5
B_CELL_NAIVE_27
12.4
B_CELL_NAIVE_28
12.3
B_CELL_NAIVE_29
12.2
B_CELL_NAIVE_30
12.2
B_CELL_NAIVE_31
12.1
B_CELL_NAIVE_32
12.1
B_CELL_NAIVE_33
12.1
B_CELL_NAIVE_34
12.1
B_CELL_NAIVE_35
12.0
B_CELL_NAIVE_36
12.0
B_CELL_NAIVE_37
11.8
B_CELL_NAIVE_38
11.8
B_CELL_NAIVE_39
11.8
B_CELL_NAIVE_40
11.8
B_CELL_NAIVE_41
11.8
B_CELL_NAIVE_42
11.7
B_CELL_NAIVE_43
11.7
B_CELL_NAIVE_44
11.6
B_CELL_NAIVE_45
11.6
B_CELL_NAIVE_46
11.5
B_CELL_NAIVE_47
11.5
B_CELL_NAIVE_48
11.4
B_CELL_NAIVE_49
11.2
B_CELL_NAIVE_50
11.2
B_CELL_NAIVE_51
11.1
B_CELL_NAIVE_52
11.1
B_CELL_NAIVE_53
11.0
B_CELL_NAIVE_54
11.0
B_CELL_NAIVE_55
10.9
B_CELL_NAIVE_56
10.7
B_CELL_NAIVE_57
10.7
B_CELL_NAIVE_58
10.6
B_CELL_NAIVE_59
10.6
B_CELL_NAIVE_60
10.6
B_CELL_NAIVE_61
10.5
B_CELL_NAIVE_62
10.5
B_CELL_NAIVE_63
10.4
B_CELL_NAIVE_64
10.4
B_CELL_NAIVE_65
10.3
B_CELL_NAIVE_66
10.3
B_CELL_NAIVE_67
10.3
B_CELL_NAIVE_68
10.3
B_CELL_NAIVE_69
10.1
B_CELL_NAIVE_70
10.1
B_CELL_NAIVE_71
10.1
B_CELL_NAIVE_72
9.9
B_CELL_NAIVE_73
9.9
B_CELL_NAIVE_74
9.9
B_CELL_NAIVE_75
9.8
B_CELL_NAIVE_76
9.8
B_CELL_NAIVE_77
9.8
B_CELL_NAIVE_78
9.8
B_CELL_NAIVE_79
9.7
B_CELL_NAIVE_80
9.6
B_CELL_NAIVE_81
9.6
B_CELL_NAIVE_82
9.5
B_CELL_NAIVE_83
9.5
B_CELL_NAIVE_84
9.5
B_CELL_NAIVE_85
9.5
B_CELL_NAIVE_86
9.1
B_CELL_NAIVE_87
8.9
B_CELL_NAIVE_88
8.9
B_CELL_NAIVE_89
8.4
B_CELL_NAIVE_90
8.3
B_CELL_NAIVE_91
7.5
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