A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.3
nTPM
Monaco:
85.4
nTPM
Schmiedel:
41.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.3
HPA sample
nTPM
NK-cell nTPM: 14.3
Samples: 6
Max nTPM: 22.3
Min nTPM: 0.9
P10809_1013
22.3
P10809_1033
14.8
P10809_1052
13.5
P10809_1071
12.5
P10809_1093
0.9
P10809_1103
21.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.4
Monaco sample
nTPM
NK-cell nTPM: 85.3
Samples: 4
Max nTPM: 99.0
Min nTPM: 72.0
RHH5316_R3683
74.0
RHH5224_R3596
72.0
RHH5253_R3625
96.3
RHH5282_R3654
99.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.7
Schmiedel sample id
TPM
NK-cell TPM: 41.7
Samples: 90
Max TPM: 67.0
Min TPM: 23.3
NK_1
67.0
NK_2
63.6
NK_3
60.9
NK_4
60.2
NK_5
58.6
NK_6
53.8
NK_7
53.5
NK_8
52.7
NK_9
50.9
NK_10
50.7
NK_11
50.7
NK_12
50.5
NK_13
50.2
NK_14
50.0
NK_15
49.7
NK_16
49.7
NK_17
49.0
NK_18
48.1
NK_19
47.7
NK_20
46.8
NK_21
46.3
NK_22
45.9
NK_23
45.0
NK_24
44.5
NK_25
44.2
NK_26
44.2
NK_27
44.1
NK_28
43.9
NK_29
43.7
NK_30
43.6
NK_31
43.3
NK_32
43.2
NK_33
43.1
NK_34
43.0
NK_35
42.7
NK_36
42.7
NK_37
42.6
NK_38
42.5
NK_39
42.3
NK_40
42.3
NK_41
41.8
NK_42
41.7
NK_43
41.5
NK_44
41.3
NK_45
41.1
NK_46
40.6
NK_47
40.4
NK_48
40.2
NK_49
40.2
NK_50
40.0
NK_51
39.7
NK_52
39.6
NK_53
39.5
NK_54
39.5
NK_55
39.4
NK_56
38.7
NK_57
38.6
NK_58
38.5
NK_59
38.4
NK_60
38.1
NK_61
37.9
NK_62
37.8
NK_63
37.8
NK_64
37.5
NK_65
37.3
NK_66
37.3
NK_67
36.7
NK_68
36.4
NK_69
36.3
NK_70
35.8
NK_71
35.6
NK_72
35.3
NK_73
35.0
NK_74
34.6
NK_75
34.4
NK_76
34.2
NK_77
33.9
NK_78
33.8
NK_79
33.6
NK_80
33.3
NK_81
33.3
NK_82
32.9
NK_83
32.6
NK_84
32.1
NK_85
30.0
NK_86
29.7
NK_87
29.5
NK_88
29.5
NK_89
26.9
NK_90
23.3
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