SRI
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • SRI
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:133.4 nTPM
HPA Brain:114.8 nTPM
GTEx:133.4 nTPM
FANTOM5:176.7 Scaled Tags Per Million
Macaque:58.4 nTPM
Mouse:17.0 nTPM
Rat:98.4 nTPM
Pig:75.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA019004Antibody HPA073666
Glial cells MediumHigh
Neuronal cells Not detectedHigh





HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 44305
Sample Intensity
Hippocampal formation_01
43352
Hippocampal formation_02
39750
Hippocampal formation_03
33658
Hippocampal formation_04
45257
Hippocampal formation_05
57315
Hippocampal formation_06
100240

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.8
Sample id Sample description nTPM
Dentate gyrus
nTPM: 87.6
2528 Male, age 74, both hemispheres 115.0
2010 Male, age 76, both hemispheres 103.8
2246 Female, age 85, both hemispheres 102.1
1927 Female, age 91, both hemispheres 90.4
2530 Female, age 94, left hemisphere 62.1
2531 Female, age 67, both hemispheres 52.2
Entorhinal gyrus
nTPM: 96.8
1938 Female, age 85, left hemisphere 135.3
2117 Female, age 91, right hemisphere 132.6
1787 Male, age 76, left hemisphere 96.4
2764 Male, age 80, right hemisphere 80.5
2686 Male, age 75, right hemisphere 78.5
2613 Female, age 94, left hemisphere 57.2
Hippocampus, CA1
nTPM: 106.6
2527 Male, age 74, both hemispheres 122.8
2082 Female, age 91, right hemisphere 109.7
1873 Female, age 85, both hemispheres 106.3
2749 Male, age 80, left hemisphere 98.5
2045 Male, age 76, both hemispheres 96.0
Hippocampus, CA2
nTPM: 103.4
2249 Male, age 74, both hemispheres 140.8
2113 Female, age 91, right hemisphere 114.3
1940 Female, age 85, left hemisphere 105.2
1892 Male, age 76, both hemispheres 99.8
1963 Male, age 80, left hemisphere 95.0
2437 Female, age 94, left hemisphere 65.5
Hippocampus, CA3
nTPM: 90.6
2436 Male, age 74, both hemispheres 120.8
1891 Female, age 85, both hemispheres 101.7
1867 Male, age 76, both hemispheres 101.5
2137 Male, age 80, left hemisphere 93.1
2620 Female, age 94, left hemisphere 68.7
2861 Female, age 67, both hemispheres 57.6
Parahippocampal cortex
nTPM: 106.0
1933 Female, age 85, both hemispheres 137.5
2250 Female, age 67, right hemisphere 128.9
2018 Male, age 76, both hemispheres 114.0
1850 Male, age 80, both hemispheres 110.2
2245 Female, age 91, both hemispheres 104.1
2622 Female, age 67, right hemisphere 103.8
1990 Female, age 91, right hemisphere 96.9
2693 Female, age 94, both hemispheres 96.5
2692 Male, age 74, both hemispheres 93.8
2532 Female, age 72, left hemisphere 74.4
Perirhinal gyrus
nTPM: 114.8
1847 Female, age 91, left hemisphere 136.7
1841 Female, age 85, right hemisphere 127.8
1794 Male, age 80, right hemisphere 110.6
2521 Female, age 94, right hemisphere 105.0
2848 Male, age 76, right hemisphere 93.7
Subiculum
nTPM: 102.6
2729 Female, age 91, right hemisphere 127.6
2619 Male, age 74, both hemispheres 121.5
1977 Female, age 85, both hemispheres 111.0
1901 Male, age 80, both hemispheres 91.1
2042 Male, age 76, both hemispheres 89.6
2438 Female, age 94, left hemisphere 75.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 133.4
Samples: 255

Max nTPM: 321.4
Min nTPM: 64.4
Std nTPM: 36.7
Median nTPM: 128.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 321.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 261.5
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 249.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 240.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 239.9
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 237.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 222.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 220.0
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 217.7
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 206.8
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 197.0
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 195.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 195.1
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 194.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 193.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 192.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 192.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 191.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 191.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 187.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 182.4
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 180.7
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 180.3
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 180.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 180.0
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 179.9
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 176.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 174.5
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 173.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 173.4
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 172.3
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 170.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 169.8
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 168.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 167.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 167.0
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 166.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 166.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 165.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 164.8
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 164.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 163.2
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 163.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 162.4
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 162.0
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 161.6
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 161.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 161.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 160.6
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 159.8
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 159.5
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 159.0
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 158.6
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 158.4
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 158.1
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 157.7
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 157.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 157.2
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 157.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 156.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 156.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 155.4
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 154.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 154.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 154.1
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 153.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 152.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 152.7
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 152.1
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 151.7
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 151.1
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 151.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 150.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 148.8
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 147.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 146.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 146.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 146.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 146.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 146.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 145.5
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 145.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 145.3
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 144.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 144.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 144.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 144.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 144.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 143.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 143.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 142.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 142.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 141.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 141.0
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 139.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 139.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 138.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 138.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 138.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 137.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 136.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 136.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 136.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 136.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 136.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 135.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 135.1
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 134.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 134.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 134.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 134.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 133.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 132.8
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 132.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 132.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 132.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 132.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 132.0
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 131.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 131.0
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 130.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 130.2
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 130.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 129.7
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 129.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 129.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 128.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 128.1
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 127.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 127.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 126.8
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 126.6
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 126.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 125.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 125.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 125.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 125.0
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 125.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 124.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 124.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 124.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 124.0
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 123.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 123.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 123.1
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 123.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 121.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 121.8
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 121.8
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 120.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 120.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 120.7
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 120.3
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 120.2
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 119.9
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 119.5
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 119.3
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 118.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 118.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 118.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 118.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 118.2
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 117.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 117.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 117.7
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 116.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 115.8
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 115.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 115.4
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 114.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 114.4
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 113.5
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 113.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 113.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 113.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 113.0
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 112.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 112.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 111.9
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 111.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 111.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 111.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 110.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 110.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 110.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 108.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 108.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 108.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 108.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 108.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 108.2
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 107.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 107.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 107.6
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 107.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 107.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 107.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 107.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 106.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 106.2
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 105.4
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 105.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 105.2
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 105.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 105.0
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 104.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 104.6
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 104.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 103.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 102.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 101.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 101.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 100.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 99.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 99.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 99.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 99.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 97.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 97.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 97.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 97.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 96.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 96.5
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 96.5
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 96.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 95.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 95.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 95.6
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 95.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 94.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 94.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 94.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 94.4
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 94.3
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 93.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 91.2
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 89.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 88.4
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 88.4
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 88.0
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 86.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 85.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 84.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 80.7
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 78.4
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 77.6
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 76.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 76.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 71.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 67.7
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 66.8
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 66.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 65.3
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 64.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 64.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

176.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 176.7
FF:10169-103B7 60 years, female 182.7
FF:10153-102I9 76 years, female 170.6

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.4
Macaque sample Sample description nTPM
Subiculum
nTPM: 58.4
Samples: 1

Max nTPM: 58.4
Min nTPM: 58.4
Sample A 58.4
Entorhinal cortex
nTPM: 46.6
Samples: 2

Max nTPM: 53.7
Min nTPM: 39.5
Sample A 53.7
Sample B 39.5
Hippocampal formation
nTPM: 46.9
Samples: 4

Max nTPM: 48.8
Min nTPM: 45.9
Sample A 45.9
Sample B 46.8
Sample C 46.0
Sample D 48.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.6
Pig sample Sample description nTPM
Subiculum
nTPM: 75.6
Samples: 4

Max nTPM: 91.0
Min nTPM: 66.5
Sample A Female 91.0
Sample B Female 72.9
Sample C Male 66.5
Sample D Male 72.0
Dorsal hippocampus
nTPM: 68.0
Samples: 4

Max nTPM: 87.1
Min nTPM: 52.7
Sample A Female 87.1
Sample B Female 66.4
Sample C Male 65.6
Sample D Male 52.7
Entorhinal cortex
nTPM: 68.0
Samples: 4

Max nTPM: 76.8
Min nTPM: 54.7
Sample A Female 69.4
Sample B Female 71.1
Sample C Male 76.8
Sample D Male 54.7
Ventral hippocampus
nTPM: 65.3
Samples: 4

Max nTPM: 72.6
Min nTPM: 57.0
Sample A Female 69.0
Sample B Female 57.0
Sample C Male 72.6
Sample D Male 62.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 16.6
Samples: 4

Max nTPM: 17.3
Min nTPM: 16.1
Sample A 16.5
Sample B 16.1
Sample C 16.3
Sample D 17.3
Hippocampal formation
nTPM: 17.0
Samples: 4

Max nTPM: 18.2
Min nTPM: 15.2
Sample A 17.0
Sample B 15.2
Sample C 17.5
Sample D 18.2

HIPPOCAMPAL FORMATION - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.4
Rat sample Sample description nTPM
Entorhinal cortex
nTPM: 82.1
Samples: 4

Max nTPM: 88.4
Min nTPM: 73.6
Sample A 87.4
Sample A 88.4
Sample A 73.6
Sample B 79.0
Ventral hippocampus
nTPM: 98.4
Samples: 4

Max nTPM: 103.0
Min nTPM: 95.0
Sample A 99.5
Sample A 103.0
Sample A 96.2
Sample A 95.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.